RNA id: TU502988



Basic Information


Item Value
RNA id TU502988
length 762
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G444443
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79524537 ~ 79525518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagagaacagtacagtagagtgcagtagtaTACAGTAGAGTGCTATACAGTagcgtacagtacagtagagtgctatacagcagagaacagtacagtagagtgctaTACAGCAggcagagaacagtacagtagagtgctatacagcagagaacagtacagtagagtgatatacagcagagaacagtacagtagagtgctatacagcagagaacagtacagtagagtgctaTACAGccgagaacagtacagtagagtacagtaccataAAGTAATGTGTTATACAGCAGAgaacagtacagcagagtacagtaccaAAAAGTAACGTGCTATACagcagagaacagtacagtagagtgctaTACAGccgagaacagtacagtagagtacagtaccataAAGTAATGTGTTATACAGCAGAgaacagtacagcagagtacagtaccatAAAGTAACGTGCTATACagcagagaacagtacagtagagtgctaTACAGccgagaacagtacagtagagtacagtaccataAAGTAATGTGTTATACAGCAGAGAACAGTACAGtagagtgctaTACAGccgagaacagtacagtagagtgctatacagcagagaacagtacagtagagtgctatacagcagagaacagtacagtagagtgctatacagcagagaacagtacagtagagtgctatacagcagagaacagtacagtagagtgctaTACAGccgagaacagtacagtagagtacagtaccataAAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU502850 lncRNA downstream 137749 79385542 ~ 79386788 (-) True cdh2
TU502856 lncRNA downstream 143080 79381242 ~ 79381457 (-) True G444318
TU502770 lncRNA downstream 170134 79354168 ~ 79354403 (-) True G444238
TU502767 lncRNA downstream 171472 79352850 ~ 79353065 (-) True G444235
TU502698 lncRNA downstream 264307 79259305 ~ 79260230 (-) True G444170
TU502995 lncRNA upstream 6988 79532506 ~ 79532738 (-) True G444449
TU503119 lncRNA upstream 102916 79628434 ~ 79628680 (-) True G444572
TU503120 lncRNA upstream 104392 79629910 ~ 79630114 (-) True G444573
TU503124 lncRNA upstream 106920 79632438 ~ 79632646 (-) True G444577
TU503128 lncRNA upstream 114309 79639827 ~ 79640070 (-) True G444581
XM_036978488.1 mRNA downstream 65030 79385540 ~ 79459507 (-) False cdh2
XM_036978489.1 mRNA downstream 74339 79386889 ~ 79450198 (-) False cdh2
XR_005051973.1 mRNA downstream 230152 79294259 ~ 79294385 (-) True LOC118964780
LOC118964722 mRNA downstream 241946 79243247 ~ 79282591 (-) True LOC118964722
XM_021604478.2 mRNA downstream 297898 79219153 ~ 79226639 (-) False LOC110524635
XR_005051592.1 mRNA upstream 11066 79536584 ~ 79606825 (-) True LOC118964535
XM_021604482.2 mRNA upstream 339659 79865177 ~ 79896739 (-) False LOC110524638
XM_036978490.1 mRNA upstream 339659 79865177 ~ 79896739 (-) True LOC110524638
XM_036978494.1 mRNA upstream 462608 79988126 ~ 80015753 (-) False b4galt6
XM_036978493.1 mRNA upstream 462608 79988126 ~ 80016228 (-) False b4galt6
TU502678 other downstream 287076 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other downstream 298669 79224003 ~ 79225868 (-) True LOC110524635
TU502514 other downstream 558508 78964631 ~ 78966029 (-) True G444001
TU501172 other downstream 1442527 78081745 ~ 78082010 (-) True G442807
TU500657 other downstream 1897323 77623299 ~ 77627214 (-) False G442381
TU503246 other upstream 205469 79730987 ~ 79731536 (-) True G444691
TU503706 other upstream 456943 79982461 ~ 79987704 (-) False G445115
TU503794 other upstream 651244 80176762 ~ 80177080 (-) True G445197
TU503806 other upstream 699957 80225475 ~ 80226201 (-) True LOC118964653
TU503818 other upstream 720425 80245943 ~ 80261505 (-) True G445220

Expression Profile