RNA id: TU503658


Basic Information

Item Value
RNA id TU503658
length 4192
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G445074
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79932101 ~ 79936292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTTTATTGAAGCTGTAAcatttaaaataatgtctctttTACAAACCAAAATAGAAACATTACTTAAGAGTGAGTGTTCCAGAGACGTTTCAGTAGATAAAAGCCTGATTGGACTGTGACTCATGTCAAAACCTTAAGGGATAGCGTACTATAATTGTTATTTATATAATAGACTTGCTTCAAAAGTGTTGTATATAATTAATGTATCGGACACTCCTAACTTCAGTCTAAATAACCAAAAGGACTTTGATCTCTAAATACAGTTGAGGTGAAACATTGGCTCGATGACATTTGGTTGATGAAATCAGATCAGACAGACCACAAAGACAGTGACTGTGCAGGAGGTCAGTAGTTTGTGTCTTCTTTTGCAATACAGCAATAGTTATTTATCTCAGTCGTCTCCTTTTTGCCAAACTTTCTCTGGAACAAACACGGCTAAGAAAAACTGTTTTCAGATATACCCAGCGTTTGACAAAATACATACCAGTGCATTTAATAGAAGAGTAACATAAAATAAACTATACAATGTTCCCCTCGTACTTTGAGAATTAGTAGATAGTCTTACACAAGTGGTAATAATTTCCCCCTCTTCCCATTCTTGTTAAAAACAAAATAGACCCTGATTGGATGAATCCATGTTTAGGTAACAGTCTGAGtgcatacacaaacacaacaaGGTATAAAAAAAAGTTACATAAAAATATGAGAATATTTgtacacaaaaacacaaacaacatAAAAATACTAAGACCCATCCTTAAGTACTATAACTGATGCAACTACAAGTATAGATTCAATCAAACCTGGATAAAATTAAAAGCTTTGGGGCATAGCTATTATACTTTGTTTCAGAATGAGCACCCAACAGTTAAGTGAGAAAAACTGTGTGACAATCTCAGTACTATTACATTGACAAACTCCAACTTCATGTTTTGAGCTTAAGACTGAAAAATGGAAGCACATTCTTCATGCTTCAAGCTCTGAGAACATGCTTGCTGCTTTTAGAAAGTCCAATTAATTACGTATACGTTAAATTCAGATCAAACAAAACCATCAAATAGTTACAATACAAGcagagacaaaaaaaaataataatatctaaACAAACCTGTCTAATCACTGAAATAACAAACATGGATGTGTATACCAGAGATGGGTGTAGAATATATAGGTTATAGCTCAGCCACTTCTGTTGTATCTCTTTGCCTATTGGCTATAGCTCATCCACTTCTGTCCTATGTGAGGCTTGCTCAGAGCCCTGCTCAGCGGGACTAGCAGGTTCCAGGTATAAGTTGCCAACAAGGTGCAGAATCTTAAACTGACTGGACAAGATGTCAGGGTTTGTATGGAAATGTACAGTCTAACATGCTCTTGGTGTGCATGGACAAGTCCCACAGACTGAAGAggaggtctgtgtgtgtatgtgtgccttcaTGCGCGTGTGGTGGGGGGCTGAGAGCCTGTCTCAGGGAGACGTGGGTGGAGATGTTCACATAGAATAACAGCAATCACACGTCTGTGGATGACAAACTCACACTAACAGCCAATAGAAAAACAAAAAAGCTTTAGATTTGTTTCGCATGTAAAGAAGTGCTCAATACTCAATTCAGTGCCCCTAATCAAAATCAGGTTGATCCTTGATGCTAATCAACAGAAATTAGGGTTGACCCCAATTATTTGACTGGTCGAATGTTTGGtagataggctgttggtcgaccaaggTTTTTTTCAGTTGAGCAGtagcaaatatatatttttatggcaCAGGACATGCCTGTCTTATTCGCGGCCATCTTAGTGAACTAATCTATTACAGAGGTCgcggggatggcacagtccaagaAGAAGGGGCATGTGGCTTCACAATGCACTTCTCTTTCCAGAACACCCTCTCTCCCgccaatttgtgcacattcattgtttcataacttcatagTATGAATTGTTGGCGTCTGATTGTTAGtgtctatcaattccccattacatatatcaccagtagtacatccAGTTAATTCCTataatttctaatctacaatgtttttttggtTACGGTAATGtgtgttaatgcattcaatataatTCCAGTATTTTACCTTTGTCAATGTCGGAGTGGTCACGTTGTTTGCAGAGcgcacaacctatgctacacttgtgagaaaccaGTTCTGGTTAATTTAATTATATTTATGAGTTTTGTCAATttagtcattgtcttttgtttggagcgcttctgtcaatgttgagtaaggacgtgCACCTGATTAcccatagaagtaggcctataggctacctggcctgcagGCACATGTAggcatataaatgtgcccatttggggatctgatagcaTTTCTGTTTGGCTTAACACACCACCACAATGACCtttggagcttctcaaagtaatattctcttcacctcaaacagcaagcaaacaaagtctgtttttacatccattgagaatgatgAACTATTgtcaatgtatttgaaaaatctttccagctctctaCCTTTCGATAAACACTCAGTgtgaaagggaaaaatgtcatgctctgatcagtggaaacatcataaaataggcctacctgattacttcttatcccttgcacaaatagcctacagGTGTGTctcattggctcgcaaaactctTGAGGGCccaatattttatacaatgtggCAAGGTTCTTCAGGCCagacccaagttaatagttgatacaatgtttcaagttcgttgcagacaggtcatgtgtagccaatgtgatttatgggatatttatttttatcaggatattttctacctgcaggctgcaatgtttttatttgttggctttataggCTCCTTTTACATAGTTAGCAATGGCAATAGAAGTAACTTTTTAGGttttgtatcattttcatttagatttggatATAATTTTGACTAACCACACGACAATGATTTTAAGATACAAAGATGTTAATATAAATGAAAACTGCTAcacaaaaatgtgcatatgaaaatcataactggcacacagatcagtagaaatggtaggataaatttGCATTCCACATGAGAAAGTTTGCTGACTCCTTGTGTAGCCTATTCCTGGCAAGTTCAGGACAGTAACATCAGAATCTGCGAAGGCCAGTTGGAGCgggaggaggatggtagggacaggcaacatttaaaaaaaattctggtTATCTTTATCCCTAGTTCCCTCTttagcatcagacaagctcaatgcatatatagttgatttgattaaaacacataggtCGTGTCTATAcatggaaaaatacacattttaaccaattgattggtcgaaagaacagacatCTTTCGGTCGACCAAGATTGTTTTTAGTAGAGGACATAAACACACATAATTTACTTAACAGCTAAAAAGAAGAATTACCATTGTCCCCCCAGAAGTTTAGAAAGTCAAATAAAGGTACCATATTGTGTTTGTACACACAAGAGGGAATCAAACAGTTCATTATTTCAGATGGAAGCTGAATCGTACTCACATgaaaacacacatgtacacactgccTGATAAAACTAAGGTGGGATGCTTTATAGGCCTGGCTGATAGAATTCGCTGTGCAAGCAGACACAAGGTTACAATCTGTAAAATATTCTGAACCTGCACATTTACACTTGCCCACTGCCACATTTTTTAAACAACAATCTAACACTTTCTCATTCTAAAACCCACTATACATCTAAGAATTATATGCTTTTCAGGGACAAAAAAATACACCCACCTTGACCACTGAATTGAAATCAAAACTTTCAAGGTGGTGACATTTCCATCCATAAATAACTTCAGTGGCATTTAATGTGTCTTGTGTTTATAGTATTATATTATTGGTCGAGACCTTATTTACTGGTGCTCTGGTTGGTCACAACTCTTTTCTCTATCACCGCCTTGCGGGAGGAGGATGCGGGGCCTACGCTGACCTTGCTGGAGGACCCGTTCAATCCTACAATGCCGCTCTGTGAGCCTGCGCTGGACTGTGCGGCTGAGCTCTGCTCTGTGGTGTAAAGGACTCTGTGTGAGCCAGAGAGGCCGTTCCTCTGCATGGACCCCTGGGAGAACCCTAACACCCCTCCCTGGCCTTTCTGCACCCCACTACCTCCGCTGCTACCCCCCTGTCCCTCCATCACCAGCATGCTCTGTGACCCTGATAAGCCCCCTCGCTGCAGGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503653 lncRNA downstream 5633 79925794 ~ 79926468 (-) False G445070
TU503654 lncRNA downstream 5633 79925794 ~ 79926468 (-) True G445070
TU503638 lncRNA downstream 22741 79909160 ~ 79909360 (-) True G445055
TU503356 lncRNA downstream 125277 79806511 ~ 79806824 (-) True G444797
TU503353 lncRNA downstream 126919 79804798 ~ 79805182 (-) True G444794
TU503670 lncRNA upstream 12961 79949253 ~ 79949580 (-) True G445086
TU503687 lncRNA upstream 32032 79968324 ~ 79968599 (-) True G445103
TU503688 lncRNA upstream 32886 79969178 ~ 79969484 (-) True G445104
TU503691 lncRNA upstream 34686 79970978 ~ 79971212 (-) True G445107
TU503692 lncRNA upstream 36087 79972379 ~ 79972671 (-) True G445108
XM_021604482.2 mRNA downstream 35362 79865177 ~ 79896739 (-) False LOC110524638
XM_036978490.1 mRNA downstream 35362 79865177 ~ 79896739 (-) True LOC110524638
XR_005051592.1 mRNA downstream 325276 79536584 ~ 79606825 (-) True LOC118964535
XM_036978488.1 mRNA downstream 472594 79385540 ~ 79459507 (-) False cdh2
XM_036978494.1 mRNA upstream 51834 79988126 ~ 80015753 (-) False b4galt6
XM_036978493.1 mRNA upstream 51834 79988126 ~ 80016228 (-) False b4galt6
XM_036978492.1 mRNA upstream 51834 79988126 ~ 80016243 (-) True b4galt6
XM_021604488.2 mRNA upstream 139404 80075696 ~ 80166735 (-) False LOC110524643
XM_021604489.2 mRNA upstream 139404 80075696 ~ 80166743 (-) True LOC110524643
TU503246 other downstream 200565 79730987 ~ 79731536 (-) True G444691
TU502678 other downstream 694640 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other downstream 706233 79224003 ~ 79225868 (-) True LOC110524635
TU502514 other downstream 966072 78964631 ~ 78966029 (-) True G444001
TU501172 other downstream 1850091 78081745 ~ 78082010 (-) True G442807
TU503706 other upstream 46169 79982461 ~ 79987704 (-) False G445115
TU503794 other upstream 240470 80176762 ~ 80177080 (-) True G445197
TU503806 other upstream 289183 80225475 ~ 80226201 (-) True LOC118964653
TU503818 other upstream 309651 80245943 ~ 80261505 (-) True G445220
TU505560 other upstream 2006993 81943285 ~ 81943611 (-) True G446775

Expression Profile