RNA id: TU503692



Basic Information


Item Value
RNA id TU503692
length 293
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G445108
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79972379 ~ 79972671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtgtgtgtgtgtgtgtgtgaaatatgaGTGTCTTTAGCATAGCCCAACTCACGTAGCAGAACACAGCTGGCTAAGATGAGCAGTCCGATGGCAGGGGTACCAATTATGGCTCCGGTGGTCTTTTGGCGTAAACTGATAGTCCTGGAGCCACAGTCTTCCCCCTCCAAACAGGTACATACCTCCACCTTGAACACCTGTGGCTCTGGGCAGGACAGGCCCTGCTCGTCTGCTACCGCCACCCTCACCTCATACTCACCCGGCCATAATGCCTCAGTAGATCTCAAGACAGCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU503691 lncRNA downstream 1167 79970978 ~ 79971212 (-) True G445107
TU503688 lncRNA downstream 2895 79969178 ~ 79969484 (-) True G445104
TU503687 lncRNA downstream 3780 79968324 ~ 79968599 (-) True G445103
TU503670 lncRNA downstream 22799 79949253 ~ 79949580 (-) True G445086
TU503658 lncRNA downstream 36087 79932101 ~ 79936292 (-) True G445074
TU503694 lncRNA upstream 1543 79974214 ~ 79974572 (-) True G445110
TU503705 lncRNA upstream 9790 79982461 ~ 79985724 (-) False G445115
TU503707 lncRNA upstream 9790 79982461 ~ 79985724 (-) True G445115
TU503709 lncRNA upstream 28609 80001280 ~ 80001644 (-) True G445117
TU503710 lncRNA upstream 47937 80020608 ~ 80023313 (-) True G445118
XM_021604482.2 mRNA downstream 75640 79865177 ~ 79896739 (-) False LOC110524638
XM_036978490.1 mRNA downstream 75640 79865177 ~ 79896739 (-) True LOC110524638
XR_005051592.1 mRNA downstream 365554 79536584 ~ 79606825 (-) True LOC118964535
XM_036978488.1 mRNA downstream 512872 79385540 ~ 79459507 (-) False cdh2
XM_036978494.1 mRNA upstream 15455 79988126 ~ 80015753 (-) False b4galt6
XM_036978493.1 mRNA upstream 15455 79988126 ~ 80016228 (-) False b4galt6
XM_036978492.1 mRNA upstream 15455 79988126 ~ 80016243 (-) True b4galt6
XM_021604488.2 mRNA upstream 103025 80075696 ~ 80166735 (-) False LOC110524643
XM_021604489.2 mRNA upstream 103025 80075696 ~ 80166743 (-) True LOC110524643
TU503246 other downstream 240843 79730987 ~ 79731536 (-) True G444691
TU502678 other downstream 734918 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other downstream 746511 79224003 ~ 79225868 (-) True LOC110524635
TU502514 other downstream 1006350 78964631 ~ 78966029 (-) True G444001
TU501172 other downstream 1890369 78081745 ~ 78082010 (-) True G442807
TU503706 other upstream 9790 79982461 ~ 79987704 (-) False G445115
TU503794 other upstream 204091 80176762 ~ 80177080 (-) True G445197
TU503806 other upstream 252804 80225475 ~ 80226201 (-) True LOC118964653
TU503818 other upstream 273272 80245943 ~ 80261505 (-) True G445220
TU505560 other upstream 1970614 81943285 ~ 81943611 (-) True G446775

Expression Profile