RNA id: TU503735



Basic Information


Item Value
RNA id TU503735
length 319
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G445142
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80058748 ~ 80059066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atattaaccaggtgaaattgtgtcatttctcttgcgttcattgcacgcagagtcagggtatatgcaacagtttgggctgcctggctcattgcaaactaatttgccagaattttacgtaattatgacataacattgaaggttgtgcaatgtaacaagaatatttagacttagggatgccacccgttagataaaataccgaacggttccgtatttcactgaaataataaacgttttgtttacgaaatgatagtttccggattcgaccatattaatgaccaaaggctcgtatttctgtgtgttattatgttataattgagtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU503727 lncRNA downstream 9407 80049047 ~ 80049341 (-) True G445134
TU503719 lncRNA downstream 21829 80036705 ~ 80036919 (-) True G445127
TU503714 lncRNA downstream 31266 80027204 ~ 80027482 (-) True G445122
TU503712 lncRNA downstream 33933 80024605 ~ 80024815 (-) True G445120
TU503710 lncRNA downstream 35435 80020608 ~ 80023313 (-) True G445118
TU503744 lncRNA upstream 12684 80071750 ~ 80071955 (-) True G445151
TU503745 lncRNA upstream 14368 80073434 ~ 80073714 (-) True G445152
TU503767 lncRNA upstream 90854 80149920 ~ 80150166 (-) True G445173
TU503768 lncRNA upstream 93332 80152398 ~ 80152732 (-) True G445174
TU503783 lncRNA upstream 112477 80171543 ~ 80172033 (-) True G445189
XM_036978492.1 mRNA downstream 42505 79988126 ~ 80016243 (-) True b4galt6
XM_036978493.1 mRNA downstream 42520 79988126 ~ 80016228 (-) False b4galt6
XM_036978494.1 mRNA downstream 42995 79988126 ~ 80015753 (-) False b4galt6
XM_021604482.2 mRNA downstream 162009 79865177 ~ 79896739 (-) False LOC110524638
XM_021604488.2 mRNA upstream 16630 80075696 ~ 80166735 (-) False LOC110524643
XM_021604489.2 mRNA upstream 16630 80075696 ~ 80166743 (-) True LOC110524643
XM_036978496.1 mRNA upstream 133319 80192385 ~ 80197919 (-) True LOC118964650
XM_036978498.1 mRNA upstream 149346 80208412 ~ 80210788 (-) True LOC118964651
XM_036978499.1 mRNA upstream 152118 80211184 ~ 80213484 (-) True LOC118964652
TU503706 other downstream 71044 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 327212 79730987 ~ 79731536 (-) True G444691
TU502678 other downstream 821287 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other downstream 832880 79224003 ~ 79225868 (-) True LOC110524635
TU502514 other downstream 1092719 78964631 ~ 78966029 (-) True G444001
TU503794 other upstream 117696 80176762 ~ 80177080 (-) True G445197
TU503806 other upstream 166409 80225475 ~ 80226201 (-) True LOC118964653
TU503818 other upstream 186877 80245943 ~ 80261505 (-) True G445220
TU505560 other upstream 1884219 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 2331589 82390655 ~ 82391224 (-) True G447220

Expression Profile