RNA id: TU503783


Basic Information

Item Value
RNA id TU503783
length 491
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G445189
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80171543 ~ 80172033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccttttcgcagattattttcaaaggagtaaaggaggagcttcctttctcagaaaggactctatagatgtaagatattttgcctttaatggattgtgctgtgacaagaagggtttcaacttcattcaactgagttctaaacctcctcttggaggtaaatgaggaaattacatgtctaatttggaagatatttgaaaaaatgggatcttggcacatcgaattcactgcagagctcttgaaaggatttcagtgtagtggttttctgatgaaataggtctgaaaaggtcctgattcctagagtatgccaaagattaaagttggcctccctcagggcttttggcaagtctgggttgcccactataggcgagtgagaacatatttgggaggaaatgcccaggtatttcttacagtccctccatgctagtagggtgctgtaaatcacaaaggttttggctatgttgcccacttcactaaagttattaatgaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503768 lncRNA downstream 18811 80152398 ~ 80152732 (-) True G445174
TU503767 lncRNA downstream 21377 80149920 ~ 80150166 (-) True G445173
TU503745 lncRNA downstream 97829 80073434 ~ 80073714 (-) True G445152
TU503744 lncRNA downstream 99588 80071750 ~ 80071955 (-) True G445151
TU503735 lncRNA downstream 112477 80058748 ~ 80059066 (-) True G445142
TU503788 lncRNA upstream 204 80172237 ~ 80172621 (-) True G445191
TU503799 lncRNA upstream 28917 80200950 ~ 80201243 (-) True G445202
TU503803 lncRNA upstream 48605 80220638 ~ 80220893 (-) True G445206
TU503814 lncRNA upstream 70553 80242586 ~ 80242951 (-) True G445217
TU503822 lncRNA upstream 133054 80305087 ~ 80305701 (-) True LOC118964724
XM_021604489.2 mRNA downstream 4800 80075696 ~ 80166743 (-) True LOC110524643
XM_021604488.2 mRNA downstream 4808 80075696 ~ 80166735 (-) False LOC110524643
XM_036978492.1 mRNA downstream 155300 79988126 ~ 80016243 (-) True b4galt6
XM_036978493.1 mRNA downstream 155315 79988126 ~ 80016228 (-) False b4galt6
XM_036978494.1 mRNA downstream 155790 79988126 ~ 80015753 (-) False b4galt6
XM_036978496.1 mRNA upstream 20352 80192385 ~ 80197919 (-) True LOC118964650
XM_036978498.1 mRNA upstream 36379 80208412 ~ 80210788 (-) True LOC118964651
XM_036978499.1 mRNA upstream 39151 80211184 ~ 80213484 (-) True LOC118964652
XM_036978500.1 mRNA upstream 51207 80223240 ~ 80233361 (-) False LOC118964653
XM_036978501.1 mRNA upstream 51263 80223296 ~ 80233361 (-) False LOC118964653
TU503706 other downstream 183839 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 440007 79730987 ~ 79731536 (-) True G444691
TU502678 other downstream 934082 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other downstream 945675 79224003 ~ 79225868 (-) True LOC110524635
TU502514 other downstream 1205514 78964631 ~ 78966029 (-) True G444001
TU503794 other upstream 4729 80176762 ~ 80177080 (-) True G445197
TU503806 other upstream 53442 80225475 ~ 80226201 (-) True LOC118964653
TU503818 other upstream 73910 80245943 ~ 80261505 (-) True G445220
TU505560 other upstream 1771252 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 2218622 82390655 ~ 82391224 (-) True G447220

Expression Profile