RNA id: TU503824



Basic Information


Item Value
RNA id TU503824
length 337
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G445226
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80312295 ~ 80312631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAGCATACTGACTCCAGTGATCTGCCTGTTTCAATCCTGAGCTTGCCTTCCCCATGTAGGAGTGAATCCCCTATATCAGAACGTAGTTCATCTTCTTTATCTGATGGATGTGATTCAACTGACTCTGTAGGAGAGAAAACACCAGAGCAACCTGAAACCAGTAAGAGTGAGGCAATACTGCAAGTGGTCAACTCAACAGGACTTGGTTCTCTCCGTAAATGCCAAAGTGAGAACTCTCTaccattactgtctctctgtgattccAACATGGTGCCCTGCACCAAAGAGGTCTTGTCCCAGATTGTGACCATGTATAGGTCAGAGGTGGCAGATTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU503823 lncRNA downstream 411 80311600 ~ 80311884 (-) True G445225
TU503822 lncRNA downstream 6594 80305087 ~ 80305701 (-) True LOC118964724
TU503814 lncRNA downstream 69344 80242586 ~ 80242951 (-) True G445217
TU503803 lncRNA downstream 91402 80220638 ~ 80220893 (-) True G445206
TU503799 lncRNA downstream 111052 80200950 ~ 80201243 (-) True G445202
TU503828 lncRNA upstream 23119 80335750 ~ 80335953 (-) True G445230
TU503843 lncRNA upstream 75000 80387631 ~ 80388000 (-) True G445244
TU503844 lncRNA upstream 76016 80388647 ~ 80388868 (-) True G445245
TU503846 lncRNA upstream 80841 80393472 ~ 80393693 (-) True G445247
TU503847 lncRNA upstream 82295 80394926 ~ 80395331 (-) True G445248
XM_036979064.1 mRNA downstream 3541 80282518 ~ 80308754 (-) False LOC118964724
XM_036978505.1 mRNA downstream 10275 80298440 ~ 80302020 (-) False LOC118936654
XM_036978503.1 mRNA downstream 10277 80288087 ~ 80302018 (-) False LOC118936654
XM_036978502.1 mRNA downstream 10277 80298440 ~ 80302018 (-) False LOC118936654
XM_036978504.1 mRNA downstream 10278 80298462 ~ 80302017 (-) True LOC118936654
XM_036979065.1 mRNA upstream 1193 80313824 ~ 80380303 (-) True LOC118964725
XM_036978513.1 mRNA upstream 10831 80323462 ~ 80326940 (-) True LOC118964659
XM_036978511.1 mRNA upstream 26486 80339117 ~ 80340580 (-) True LOC118964657
XM_036978512.1 mRNA upstream 88400 80401031 ~ 80403359 (-) True LOC118964658
XM_036979066.1 mRNA upstream 92172 80404803 ~ 80412432 (-) True LOC118964726
TU503818 other downstream 50790 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 86094 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 135215 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 324591 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 580759 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1630654 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 2078024 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 3004882 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 3006005 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 3197722 83510353 ~ 83520273 (-) True G448079

Expression Profile