RNA id: TU504228


Basic Information

Item Value
RNA id TU504228
length 1381
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G445596
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80804313 ~ 80806686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTAGATCTGGTTGATTTTACccactaggggttagggtaagctGATCCAGGTTCTGAACCTAGGGAAAACTTCACCCCAGAGCCACAAAACACTGTTCTGCACTGAAACAAGACTCAAAGTAGTGCTAAAATGACACCCAGACTCAGCAGTTAAAATAAACATTGATTTATTCTCTCAGCCCACCACTCATGTACATATTGCACAGTTGTATTTTGTGAAGAAAGTTATAAAAGAACATATCCAAAACTACCTGGTATTCTATATGATACAGCAGACAAATTGAGTAGTGAACAACCCACTCAAAATGGCAGCACAATGATTTATTTGTGGAAAATTCTATTTTGTTGCCATATTGGGTGGACATAGAGGGAATCCTATGGACAAATAACTAGTTTAAGTCCATTATACCCACTCTAGTCATATGGTATAGACATGGTTATAGAGGAGATAGGAGTCCTGCTGGTCACTCCAGACAAGATAGGAAGTAGGGTACTATTTGGGACACATCTTACATCAGAGGTGGGTAATTCCAGTCCctgagggcctgattggtgtgtcAGTttttccccagccccagctaacacacctgactccaataatcaactaatcatgatcttcagttgaATGTAATtagtttaaatcagctgtgttggCTAGGGATGGGCGAAAAGTGtttcaccaatcaggccctcaaggactggagttgcccatccctgtcctACATAGTGCCATagatctctggtcaaaagtagtgtactatatagggcagCCATACTCAACAGTTGGACCGTAGGCTGGATCTAGACTCAGAATGGGGTCAATACAGTCAGGATTCAACTCCTGGTATATCAACAAATAAGACatggaaaatgtgtagaattgcaggaaattagctttaaaacattaATTTTTCTCTGCCAACaaaaggggtgtgaacagtttggggtcGAATGGGTTGAGGATTCATTATTACGCCGATAAATTACAATAGCCATCCAGACCTTTGCCACCTTCTCAAATAGTTTGAGTACAACTGATATAGGAACAGGATGCTGTTTGAGTGTTAAAACAGAGCGATTAGCCCAGCCTACACTCTACACATTCTTCATGGAATCTCAGCAACATGATCAGGACCACATTACATCAGTCTAACAGGACTTCATTTAATGGCAGATAATGTTCTTCATGTACGCTCTAAGTCCTAAGTTCTTTGTCAGTTCTAGAACCTTCAGCTCCACTCCTCCTGACCCCTCCATCACAGTCCCCTATTCCTGCTCCTTCCTTCCTAGGACTGGTTTCCTAACAGCCAATCTGTTTTGAGGAATCTTCACTTGCGGGCGGTGTCGTAATTGGCCACGAACCAATCACATGTCTCCttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504187 lncRNA downstream 13173 80725771 ~ 80791140 (-) True G445557
TU504146 lncRNA downstream 143056 80657593 ~ 80661257 (-) True G445518
TU503868 lncRNA downstream 366497 80437233 ~ 80437816 (-) True LOC118964666
TU503867 lncRNA downstream 373941 80430144 ~ 80430372 (-) True G445267
TU503865 lncRNA downstream 377912 80426026 ~ 80426401 (-) True G445265
TU504242 lncRNA upstream 20483 80827169 ~ 80827490 (-) True G445610
TU504245 lncRNA upstream 27715 80834401 ~ 80834710 (-) True G445613
TU504250 lncRNA upstream 29975 80836661 ~ 80839422 (-) True G445616
TU504256 lncRNA upstream 55916 80862602 ~ 80862843 (-) True G445622
TU504587 lncRNA upstream 198488 81005174 ~ 81032383 (-) True G445927
XR_005051872.1 mRNA downstream 16518 80781794 ~ 80787795 (-) False LOC118964670
XR_005051873.1 mRNA downstream 16518 80781794 ~ 80787795 (-) True LOC118964670
XM_021604492.2 mRNA downstream 214193 80573427 ~ 80590120 (-) True mcm3l
XM_036978527.1 mRNA downstream 258640 80543930 ~ 80545673 (-) True LOC118964669
XM_036978519.1 mRNA downstream 278913 80522519 ~ 80525400 (-) True LOC118964661
XM_021604496.2 mRNA upstream 2676 80809362 ~ 80818373 (-) False bmb
XM_021604497.2 mRNA upstream 2994 80809680 ~ 80818373 (-) True bmb
XM_036978532.1 mRNA upstream 33212 80839898 ~ 80861050 (-) False serpinb1
XM_036978533.1 mRNA upstream 33212 80839898 ~ 80861206 (-) False serpinb1
XM_036978534.1 mRNA upstream 33212 80839898 ~ 80861326 (-) False serpinb1
TU503818 other downstream 542808 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 578112 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 627233 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 816609 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 1072777 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1136599 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1583969 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2510827 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2511950 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2703667 83510353 ~ 83520273 (-) True G448079

Expression Profile