RNA id: TU504250


Basic Information

Item Value
RNA id TU504250
length 2762
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G445616
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80836661 ~ 80839422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgcacgaacccagtcttcactatgactcatccatacatcaattgtctcaatgatttatttattaactaactaactaatcacagaaatgcacaaaCAAATCAAGTAGATATGGTTACATGGAAATCATAGGGggtgtgccctagtgggctaaaccggtatggaggcttggtagacaaagggacTGAGAAGGGCGTGAAAGACAAAAgacactacacagttgataattataacaattgaaatgctaatcctttgcacatgaacgctcactcattcgggaataattgcaatcaatatatatatttactcccAGCGTGTCGTCGTggtctctgttggaatcgtccttttctgttggagagttCATCCGAGATTCTCTGTGTCCCTGGAGTCTtgggttagaatggatacttcagagtaacattcagaaatgttcttatagATAGATGTTTTGGCGGTTGTAGGTCTTCGCATTCAATGGTAcagaattcctagctgcagacaaTTAATTAGTATCGAAGAGTTGAGagttgctcttattctgtcggtatcgatagtctcagagtttaaccacgtggtatggttaagaaTTCAGCAACAAGGAATgcatggtctctactcaaaccttagccctctcggtaATCGAGGTAGCTTGGTCTGAAGGGAAATTCCCAAGGTGGGGTTATATCCAGAACAGTAGGAAAGGGCTGTCCCATGACGCCAGTTCAATGTCTGTGCTCTTGGGGCGGGCCTATGACttagttaaactccaaagggaatCAGTGTAAAATCACATTagatcatttcacaaatagtttcatctttactcattcattttatacaacaattagatgcaaaCACCATAACTgagactcttgtataaacagagttatggtaatgtggctgtattgtctctcatgagtttcacaaacaTTAAACGAAATGGACCGGTCATAGCTGGGTTCTCCCCCGACCAtgtacacattctccaaaacatggacattgttcagttctcaagtccTGTGATGTGGAAGAGGTTCCTTTGTTCTCCtgtaaaactctctctctctatactgcatGGCCATGTCTCCTCGTGGAATTTACGACCTgcgataacagaacctgggtgggggggggggggtgttagagaGAGGGGATGGTACTCGCTATCCCCaaagagggccacgtcatgacaactattgagagcatcctgtcgggctgtatcaccacctggtatggcaactgcacagcCATAACCGCAGgtctctctagagggtggtgcggtctgcccaacacatcactgggggcacgctgcctgccctccaggacacctacagcacccaatgtcacaggatggccaaaaagatcatcaaaaacatcaaccatccgagccacggcctgttcacaatgctatcatccagaaggcgaggtcagtacaggtgcatcaaagctgggaccgagacactgaaaaacagcttctatcacaaggccatctgactgttaaatagccatcactagccggctagcCGTCACCGTCACTAGTcggctaccacctggttactcaaccctgaaccttagtcTGCAGCCCtttgtacatagacatggaatcactggtcactttaataatgtttacatcatgttttactcatttcatgtatacagtatactgtattctagtcaaggccatcctattcaactattgctgtatatactgtataatattaTATCCTACATACTCTACAGATATACTAAATATTCtttccacatactgtccataatgtctatagaTCTGTTATGGGATTTTTTATGAATCATGACTAAATGAGGTATACTGCACTATAACTGGCAAGaattctaccctgtctttctTGTAGTGTTAAATAATGTTTGTTCATTAGGAAGGGGTTATATGGCATGtacctaggaagaaaggaatgtacAATATGTGGGGGTAGAAAGAGAACGGAGAGGAGCATTAAcctgcagtggggcaaaaaattatttagtcagccaccaattataGGTCTGTTTTCAtggaaatttctaagtgaccccaaacttttgaacggtagtgtatatttagaCTCCGGCATTGTTTGCCCTAatgtttatatatttcttaattccattattttacttttagatctgtgtgtattgttgtgaatctatagatattactgcactgctggagcaaGGAACACAAGCTTTTTGGTacaccgcaataacatctgctaaatatgtgtatgcgaccaataacatttgatttgatttgagaaatgTAAACActatcaaattcatagacagagttaTAGATGCAAAAACTGACCATCCATTAGatgaaaattattattattattttaaccaACCCAGCAAACATGTCCACATTGGCACAATGCAGGCTAAAATATTGGTCCCATGTGCATTTGCTATTTCATAGGAATATATTTATAATTAATTTATTACAATTTAATTCAATGCAAAAATTCTATAATTTTCAAGCCTTTAAAGGTAATTTAGGAACGTGATACATTGTATTAGAAAGACAACTAAGTTAATACTATCATTCATACATACTGAACAAAGACAttaacgcaacatgtgaagtgttggttccatgtttcataagcttaaataaaagatcacagaaattttccatatgcacaaaaagcttatttctctcaaattgtgtgcacaaattagtttacatccctgttagtgagcatttctcctttgccaagataatccatccaccagacAGGTGTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504245 lncRNA downstream 1951 80834401 ~ 80834710 (-) True G445613
TU504242 lncRNA downstream 9171 80827169 ~ 80827490 (-) True G445610
TU504228 lncRNA downstream 29975 80804313 ~ 80806686 (-) True G445596
TU504187 lncRNA downstream 45521 80725771 ~ 80791140 (-) True G445557
TU504146 lncRNA downstream 175404 80657593 ~ 80661257 (-) True G445518
TU504256 lncRNA upstream 23180 80862602 ~ 80862843 (-) True G445622
TU504587 lncRNA upstream 165752 81005174 ~ 81032383 (-) True G445927
TU504625 lncRNA upstream 251381 81090803 ~ 81091641 (-) True G445963
TU504647 lncRNA upstream 289637 81129059 ~ 81129571 (-) True G445985
TU504677 lncRNA upstream 337262 81176684 ~ 81260932 (-) True G446011
XM_021604496.2 mRNA downstream 18288 80809362 ~ 80818373 (-) False bmb
XM_021604497.2 mRNA downstream 18288 80809680 ~ 80818373 (-) True bmb
XR_005051872.1 mRNA downstream 48866 80781794 ~ 80787795 (-) False LOC118964670
XR_005051873.1 mRNA downstream 48866 80781794 ~ 80787795 (-) True LOC118964670
XM_021604492.2 mRNA downstream 246541 80573427 ~ 80590120 (-) True mcm3l
XM_036978532.1 mRNA upstream 476 80839898 ~ 80861050 (-) False serpinb1
XM_036978533.1 mRNA upstream 476 80839898 ~ 80861206 (-) False serpinb1
XM_036978534.1 mRNA upstream 476 80839898 ~ 80861326 (-) False serpinb1
XM_036978531.1 mRNA upstream 476 80839898 ~ 80861365 (-) True serpinb1
XM_021604504.2 mRNA upstream 398560 81237982 ~ 81240184 (-) True LOC110524659
TU503818 other downstream 575156 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 610460 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 659581 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 848957 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 1105125 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1103863 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1551233 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2478091 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2479214 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2670931 83510353 ~ 83520273 (-) True G448079

Expression Profile