RNA id: TU504587


Basic Information

Item Value
RNA id TU504587
length 586
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G445927
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81005174 ~ 81032383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gATGCTCTCTAGCAGacttcagactggcctggacatgtactagctcaagcagggggacacgtctggcactgcaggatttgagtccctggcggcgtagtgcgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtccccccgtgtggttctgggatttttgctcactgttcttgtgatcattttgaccccacgggtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtaggtcttccatttcctaataattgctcccacagttgatttcttcaaacgaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaatgttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggtgtgtgactgtttgaggttgtcttttatactgataagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccagatacttattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504256 lncRNA downstream 142331 80862602 ~ 80862843 (-) True G445622
TU504250 lncRNA downstream 165752 80836661 ~ 80839422 (-) True G445616
TU504245 lncRNA downstream 170464 80834401 ~ 80834710 (-) True G445613
TU504242 lncRNA downstream 177684 80827169 ~ 80827490 (-) True G445610
TU504228 lncRNA downstream 198488 80804313 ~ 80806686 (-) True G445596
TU504625 lncRNA upstream 58420 81090803 ~ 81091641 (-) True G445963
TU504647 lncRNA upstream 96676 81129059 ~ 81129571 (-) True G445985
TU504677 lncRNA upstream 144301 81176684 ~ 81260932 (-) True G446011
TU504738 lncRNA upstream 231600 81263983 ~ 81264219 (-) True G446059
TU504750 lncRNA upstream 249406 81281789 ~ 81282170 (-) True G446070
XM_036978531.1 mRNA downstream 143809 80839898 ~ 80861365 (-) True serpinb1
XM_036978534.1 mRNA downstream 143848 80839898 ~ 80861326 (-) False serpinb1
XM_036978533.1 mRNA downstream 143968 80839898 ~ 80861206 (-) False serpinb1
XM_036978532.1 mRNA downstream 144124 80839898 ~ 80861050 (-) False serpinb1
XM_021604497.2 mRNA downstream 186801 80809680 ~ 80818373 (-) True bmb
XM_021604504.2 mRNA upstream 205599 81237982 ~ 81240184 (-) True LOC110524659
XM_021604505.2 mRNA upstream 233074 81265457 ~ 81271056 (-) True LOC110524660
XM_021604506.2 mRNA upstream 244883 81277266 ~ 81279193 (-) True LOC110524661
XM_036978543.1 mRNA upstream 547935 81580318 ~ 81589232 (-) True LOC110524663
XM_021604511.2 mRNA upstream 601980 81634363 ~ 81637591 (-) True LOC110524664
TU503818 other downstream 743669 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 778973 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 828094 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 1017470 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 1273638 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 910902 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1358272 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2285130 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2286253 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2477970 83510353 ~ 83520273 (-) True G448079

Expression Profile