RNA id: TU504750


Basic Information

Item Value
RNA id TU504750
length 382
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G446070
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81281789 ~ 81282170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atTCTCTGGGAGGAACTTTCAGAGCTCCTAACATTAAAGACAGATTAAGATGCCTGATAGATACATAACAGAAGAGGGGATGATTCAAAGACTTCTTTCCTCTTTTGTTGATCTTTGTTTTTTTTTCAAGAGGCAATTTGAATACGAACTTCCGACAACTTTCTgtgaatggtgcaggatagtttcttggctttggaacattctcaacacatttaaggaacttgacaaaaaaaacgttattttcttggtattttATTACTTCACACATGGTTACAATTCATTTCAATATTGGTAATGTTCTAGGGACGTTCTCCACTGGTGGGAatgtcagtacttcagcataaggatttcctacaggtttcctcatgggtCTATTCAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504738 lncRNA downstream 17570 81263983 ~ 81264219 (-) True G446059
TU504677 lncRNA downstream 20857 81176684 ~ 81260932 (-) True G446011
TU504647 lncRNA downstream 152218 81129059 ~ 81129571 (-) True G445985
TU504625 lncRNA downstream 190148 81090803 ~ 81091641 (-) True G445963
TU504587 lncRNA downstream 249406 81005174 ~ 81032383 (-) True G445927
TU504754 lncRNA upstream 6380 81288550 ~ 81288822 (-) True G446074
TU504762 lncRNA upstream 15867 81298037 ~ 81298246 (-) True G446082
TU504766 lncRNA upstream 24879 81307049 ~ 81307389 (-) True G446086
TU504777 lncRNA upstream 39561 81321731 ~ 81322015 (-) True G446097
TU504783 lncRNA upstream 46782 81328952 ~ 81329178 (-) True G446103
XM_021604506.2 mRNA downstream 2596 81277266 ~ 81279193 (-) True LOC110524661
XM_021604505.2 mRNA downstream 10733 81265457 ~ 81271056 (-) True LOC110524660
XM_021604504.2 mRNA downstream 41605 81237982 ~ 81240184 (-) True LOC110524659
XM_036978531.1 mRNA downstream 420424 80839898 ~ 80861365 (-) True serpinb1
XM_036978534.1 mRNA downstream 420463 80839898 ~ 80861326 (-) False serpinb1
XM_036978543.1 mRNA upstream 298148 81580318 ~ 81589232 (-) True LOC110524663
XM_021604511.2 mRNA upstream 352193 81634363 ~ 81637591 (-) True LOC110524664
XM_036978544.1 mRNA upstream 357292 81639462 ~ 81767595 (-) False LOC110524665
XM_036978545.1 mRNA upstream 357292 81639462 ~ 81767595 (-) False LOC110524665
XM_036978546.1 mRNA upstream 357292 81639462 ~ 81767595 (-) True LOC110524665
TU503818 other downstream 1020284 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 1055588 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 1104709 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 1294085 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 1550253 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 661115 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1108485 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2035343 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2036466 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2228183 83510353 ~ 83520273 (-) True G448079

Expression Profile