RNA id: TU504777


Basic Information

Item Value
RNA id TU504777
length 285
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G446097
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81321731 ~ 81322015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggcatctttcttttggtgtttttcagagtctgtagaaaggcctctttagtatcctaagttttcacaactgtgaccttaattgcctaccatctgtaagctgttagtgtcttaacgaccgttccacaggtgcatgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaagatctgtgaagttatttggatttttacggattatctttgaaagacagggtcctgaaaaagggacatttattataggatacagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504766 lncRNA downstream 14342 81307049 ~ 81307389 (-) True G446086
TU504762 lncRNA downstream 23485 81298037 ~ 81298246 (-) True G446082
TU504754 lncRNA downstream 32909 81288550 ~ 81288822 (-) True G446074
TU504750 lncRNA downstream 39561 81281789 ~ 81282170 (-) True G446070
TU504738 lncRNA downstream 57512 81263983 ~ 81264219 (-) True G446059
TU504783 lncRNA upstream 6937 81328952 ~ 81329178 (-) True G446103
TU504795 lncRNA upstream 15535 81337550 ~ 81338668 (-) True G446112
TU504805 lncRNA upstream 21780 81343795 ~ 81344264 (-) True G446120
TU504811 lncRNA upstream 27756 81349771 ~ 81350033 (-) True G446126
TU504813 lncRNA upstream 28925 81350940 ~ 81351294 (-) True G446128
XM_021604506.2 mRNA downstream 42538 81277266 ~ 81279193 (-) True LOC110524661
XM_021604505.2 mRNA downstream 50675 81265457 ~ 81271056 (-) True LOC110524660
XM_021604504.2 mRNA downstream 81547 81237982 ~ 81240184 (-) True LOC110524659
XM_036978531.1 mRNA downstream 460366 80839898 ~ 80861365 (-) True serpinb1
XM_036978534.1 mRNA downstream 460405 80839898 ~ 80861326 (-) False serpinb1
XM_036978543.1 mRNA upstream 258303 81580318 ~ 81589232 (-) True LOC110524663
XM_021604511.2 mRNA upstream 312348 81634363 ~ 81637591 (-) True LOC110524664
XM_036978544.1 mRNA upstream 317447 81639462 ~ 81767595 (-) False LOC110524665
XM_036978545.1 mRNA upstream 317447 81639462 ~ 81767595 (-) False LOC110524665
XM_036978546.1 mRNA upstream 317447 81639462 ~ 81767595 (-) True LOC110524665
TU503818 other downstream 1060226 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 1095530 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 1144651 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 1334027 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 1590195 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 621270 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1068640 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 1995498 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 1996621 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2188338 83510353 ~ 83520273 (-) True G448079

Expression Profile