RNA id: TU504805


Basic Information

Item Value
RNA id TU504805
length 470
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G446120
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81343795 ~ 81344264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcggcaaccatcactcctgtgttccagtggcacgttgtgttagctaatccaagtttatcattttgaaaggctaattgatcattagaaaaccctttttcaattatgttagcacagctgaaacctgttgttctgattaaagaagcactaaaactggccttcttttgactagttgagtatctggagcatcagtatttgtgggttcgattacaggctcaaaatggctagaaacaaagaacttccTTTTGAAACTTGGCAGTATATTCTTGTTCTGTGAAATGAGGGCTATTCCAtgggagaaattgccaagaaactgaggaACTTGTACAACGATGTGTGCCACTCCCTCACGGAACGTATATATAAGTATTCATGCCCactgaccttttccacattttgttgtgttacagcctgaaatcaaaattgggtaaaaacaataacaacaatttaatcatctacaaacaatacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504795 lncRNA downstream 5127 81337550 ~ 81338668 (-) True G446112
TU504783 lncRNA downstream 14617 81328952 ~ 81329178 (-) True G446103
TU504777 lncRNA downstream 21780 81321731 ~ 81322015 (-) True G446097
TU504766 lncRNA downstream 36406 81307049 ~ 81307389 (-) True G446086
TU504762 lncRNA downstream 45549 81298037 ~ 81298246 (-) True G446082
TU504811 lncRNA upstream 5507 81349771 ~ 81350033 (-) True G446126
TU504813 lncRNA upstream 6676 81350940 ~ 81351294 (-) True G446128
TU504814 lncRNA upstream 8070 81352334 ~ 81352578 (-) True G446129
TU505318 lncRNA upstream 64678 81408942 ~ 81409622 (-) True G446556
TU505317 lncRNA upstream 70293 81414557 ~ 81414951 (-) True G446555
XM_021604506.2 mRNA downstream 64602 81277266 ~ 81279193 (-) True LOC110524661
XM_021604505.2 mRNA downstream 72739 81265457 ~ 81271056 (-) True LOC110524660
XM_021604504.2 mRNA downstream 103611 81237982 ~ 81240184 (-) True LOC110524659
XM_036978531.1 mRNA downstream 482430 80839898 ~ 80861365 (-) True serpinb1
XM_036978534.1 mRNA downstream 482469 80839898 ~ 80861326 (-) False serpinb1
XM_036978543.1 mRNA upstream 236054 81580318 ~ 81589232 (-) True LOC110524663
XM_021604511.2 mRNA upstream 290099 81634363 ~ 81637591 (-) True LOC110524664
XM_036978544.1 mRNA upstream 295198 81639462 ~ 81767595 (-) False LOC110524665
XM_036978545.1 mRNA upstream 295198 81639462 ~ 81767595 (-) False LOC110524665
XM_036978546.1 mRNA upstream 295198 81639462 ~ 81767595 (-) True LOC110524665
TU503818 other downstream 1082290 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 1117594 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 1166715 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 1356091 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 1612259 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 599021 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1046391 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 1973249 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 1974372 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2166089 83510353 ~ 83520273 (-) True G448079

Expression Profile