RNA id: TU505560



Basic Information


Item Value
RNA id TU505560
length 327
RNA type TUCP
GC content 0.59
exon number 1
gene id G446775
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81943285 ~ 81943611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atctagcccggccgatacaaggcgctgcaatgtaccgcaccgggctatgcacacgcaccgcctcacggcataacacggtgcctgcccggtccctctctctccacggtaagcacagggagttggtgcaggtctcctacctgacttcgccacactccccgtgtgcctccccaaTAAATTTTTGTGGCTGCCTCTCGGGCCTCCTTGATCGCCGTGCCAACTCCATTCGCCGATATCCCTCCTCACATTGTTCcagagaatcccaggcgggctccgggaCTCTCCCTGGGTCAACCGACCACCTCTCTATTTCGTCCCATGTTGTAACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU505559 lncRNA downstream 1475 81941370 ~ 81941810 (-) True G446774
TU505525 lncRNA downstream 63445 81879437 ~ 81879840 (-) True G446744
TU505468 lncRNA downstream 70127 81776894 ~ 81873158 (-) True G446691
TU505450 lncRNA downstream 117580 81794081 ~ 81825705 (-) True G446674
TU505498 lncRNA downstream 126115 81816197 ~ 81817170 (-) True G446718
TU505563 lncRNA upstream 5590 81949201 ~ 81949441 (-) True G446778
TU505584 lncRNA upstream 30008 81973619 ~ 82053804 (-) True G446799
TU505602 lncRNA upstream 76196 82019807 ~ 82045817 (-) True G446814
TU505586 lncRNA upstream 86564 82030175 ~ 82059696 (-) True G446800
TU505629 lncRNA upstream 130239 82073850 ~ 82074070 (-) True G446841
XM_036978550.1 mRNA downstream 53372 81845423 ~ 81889913 (-) True LOC110524669
XM_021604520.2 mRNA downstream 53378 81843519 ~ 81889907 (-) False LOC110524669
XM_036978549.1 mRNA downstream 79795 81845422 ~ 81863490 (-) False LOC110524669
XM_036978548.1 mRNA downstream 79797 81845423 ~ 81863488 (-) False LOC110524669
XM_021604518.2 mRNA downstream 79800 81843519 ~ 81863485 (-) False LOC110524669
XM_021604522.2 mRNA upstream 331476 82275087 ~ 82346684 (-) True igfbp3
XM_021604524.2 mRNA upstream 489604 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978552.1 mRNA upstream 489604 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978553.1 mRNA upstream 489604 82433215 ~ 82536323 (-) True si:ch211-191a24.3
XM_036978557.1 mRNA upstream 657849 82601460 ~ 82605352 (-) False si:ch211-191a24.4
TU503818 other downstream 1681780 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 1717084 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 1766205 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 1955581 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 2211749 79730987 ~ 79731536 (-) True G444691
TU506105 other upstream 447044 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 1373902 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 1375025 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 1566742 83510353 ~ 83520273 (-) True G448079
TU507522 other upstream 1927991 83871602 ~ 83873308 (-) True G448411

Expression Profile