RNA id: TU505602


Basic Information

Item Value
RNA id TU505602
length 2205
lncRNA type intronic
GC content 0.40
exon number 2
gene id G446814
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82019807 ~ 82045817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtgagagagtgtaaatttaggaggccataatgtgagagagtgtaacttcagtaagccataatgtgagagtataacttcagtaagccataatgtgagtgtaacttcagtaagccataatgtgagagagtgtaacttcaggaagccataattttagagagtgtaacttcaggaagccataatgtgagagtgtaacttcagtaagccataatgtgagagtataacttcagtaagccataatgtgagagagtgtaacttcaggaagccataattttagagagtgtaacttcaggaagccataatgtgagagtgtaacttcattaagccataatgtgagtgtaacttcagtaagccataatgtgagagagtgtaacttcagtaagccataatgtgagagtgtaacttcaggaagccataatgttagagagtgtaacttcaggaagccataatgtgagagagtgtaacttcagtaagccataatgtgagagtgtaacttcaggaagccataatgtgagagagtgtaacttcaggaagccataattttagagagtgtaacttcaggaagccataatgtgagagtgtaacttcattaagccataatgtgagtgtaacttcagtaagccataatgtgagagagtgtaacttcagtaagccataatgtgagagtgtaacttcaggaagccataatgttagagagtgtaacttcaggaagccataatgtgagagagtgtaacttcagtaagccataatgtgagagtgtaacttcaggaagccataatgtgagagtgtaaattcagtaagccataatgtgagagagtgtaacttcagtaagccaaaatgtgagagagtgtaaatttaggaagccatagtgtgagagtgtaacttcgggaagccataatgtgaaagagtgcaacttcaggaagccataatgtcagagagtgtaacttcagtaagcaataatgtgagagatTGCAACTTCAGaaagccataatgtgagtgtaacttcagggagccaaaatgtgagagagtgcaacttcaggaagccacaatgtgagagagtgcaacttcaggaagccataatgtgagggaatgtaacttcagtaagccataatgtgagagtgtaacttcagtaagccataatgtgagagagtgcaacttcaggaagccataatgtgagagagagtaacttcaggaagccataatgtgagagagtgtaacttcaggaagccataatgttagagagtgtaacttcagtaagccataatgtgagagtgtaacttcaggaagccataatgtgagagagtgtaacttcaggaagccataatgtgagagagtgtaacttcaggaagccataatgtgagagtgtaacttcaggaagccataatgtgagagtgtaacttcattaagccataatgtgagtgtaacttcagtaagccataatgtgagagagtgtaacttcagtaagccataatgtgagagtgtaacttcaggaagccataatgttagagagtgtaacttcaggaagccataatgtgagagagtgtaacttcagtaagccataatgtgagagtgtaacttcaggaagccataatgtgagagtgtaacttcagtaagccataatgtgagagagtgtaacttcagtaagccaaaatgtgagagagtgtaaatttaggaagccatagtgtgagagtgtaacttcgggaagccataatgtgaaagagtgcaacttcaggaagccataatgtcagagagtgtaacttcagtaagcaataatgtgagagatTGCAACTTCAGaaagccataatgtgagtgtaacttcagggagccaaaatgtgagagagtgcaacttcaggaagccacaatgttagagagtgcaacttcaggaagccataatgtgagggaatgtaacttcagtaagccataatgtgagagtgtaacttcagtaagccataatgtgagagagtgcaacttcaggaagccataatgtgagagagtgtaacttcaggaagccataatgtgagagagtgtaacttcaggaagccataatgttagagagtgtaacttcaggaagccataatgtgagagtgtaacttcaggaagccataatgtgagagagtgtaacttctgcaggaagccataatgtgagagagtgtaacttcaggaagccataatgtgagagtgtaacttcaggaagccataatgtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU505563 lncRNA downstream 70366 81949201 ~ 81949441 (-) True G446778
TU505559 lncRNA downstream 77997 81941370 ~ 81941810 (-) True G446774
TU505525 lncRNA downstream 139967 81879437 ~ 81879840 (-) True G446744
TU505450 lncRNA downstream 194102 81794081 ~ 81825705 (-) True G446674
TU505629 lncRNA upstream 28033 82073850 ~ 82074070 (-) True G446841
TU505630 lncRNA upstream 30447 82076264 ~ 82077060 (-) True G446842
TU505632 lncRNA upstream 41768 82087585 ~ 82087797 (-) True G446844
TU505634 lncRNA upstream 42077 82087894 ~ 82116762 (-) True G446845
TU505649 lncRNA upstream 63398 82109215 ~ 82110638 (-) True G446858
XM_036978550.1 mRNA downstream 129894 81845423 ~ 81889913 (-) True LOC110524669
XM_021604520.2 mRNA downstream 129900 81843519 ~ 81889907 (-) False LOC110524669
XM_036978549.1 mRNA downstream 156317 81845422 ~ 81863490 (-) False LOC110524669
XM_036978548.1 mRNA downstream 156319 81845423 ~ 81863488 (-) False LOC110524669
XM_021604518.2 mRNA downstream 156322 81843519 ~ 81863485 (-) False LOC110524669
XM_021604522.2 mRNA upstream 229270 82275087 ~ 82346684 (-) True igfbp3
XM_021604524.2 mRNA upstream 387398 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978552.1 mRNA upstream 387398 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978553.1 mRNA upstream 387398 82433215 ~ 82536323 (-) True si:ch211-191a24.3
XM_036978557.1 mRNA upstream 555643 82601460 ~ 82605352 (-) False si:ch211-191a24.4
TU505560 other downstream 76196 81943285 ~ 81943611 (-) True G446775
TU503818 other downstream 1758302 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 1793606 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 1842727 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 2032103 79982461 ~ 79987704 (-) False G445115
TU506105 other upstream 344838 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 1271696 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 1272819 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 1464536 83510353 ~ 83520273 (-) True G448079
TU507522 other upstream 1825785 83871602 ~ 83873308 (-) True G448411

Expression Profile