RNA id: TU507279


Basic Information

Item Value
RNA id TU507279
length 352
lncRNA type intronic
GC content 0.41
exon number 2
gene id G448210
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 83642359 ~ 83648780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggtttttgtatgtggtgtgtatgtatggggattgtagctagtggggtgttctagctaagtctatggctgtctgaagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttgagtttgtcgtgggtgattgtccttagtgtcctgatgtcattgttctgtgttaggttacacaagtataggctgtttcggttttcgttaagttttattgttttggtagtgtttgtgtttagtgtgttacttcattaaacatggattgcaatagacacgccgcattttggtccgactctccttcacacctagaaaaccgttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU507239 lncRNA downstream 73310 83568273 ~ 83569049 (-) True G448176
TU507226 lncRNA downstream 89021 83553098 ~ 83553338 (-) True G448163
TU507144 lncRNA downstream 106042 83535716 ~ 83536317 (-) True G448086
TU507131 lncRNA downstream 124336 83501265 ~ 83518023 (-) True G448075
TU507126 lncRNA downstream 125493 83469448 ~ 83516866 (-) True G448071
TU507314 lncRNA upstream 38152 83686932 ~ 83687169 (-) True G448242
TU507324 lncRNA upstream 49270 83698050 ~ 83698306 (-) True G448252
TU507344 lncRNA upstream 78692 83727472 ~ 83727983 (-) True G448272
TU507366 lncRNA upstream 113001 83761781 ~ 83769470 (-) True G448289
TU507373 lncRNA upstream 123167 83771947 ~ 83772719 (-) True G448296
XM_036978568.1 mRNA downstream 42637 83584736 ~ 83599722 (-) True LOC110524681
XM_021604537.2 mRNA downstream 42646 83584736 ~ 83599713 (-) False LOC110524681
XM_036976501.1 mRNA downstream 336117 83250984 ~ 83306242 (-) False adcyap1r1b
NM_001124641.1 mRNA downstream 336156 83241207 ~ 83306203 (-) False adcyap1r1b
XM_036978563.1 mRNA downstream 545296 82981449 ~ 83097063 (-) True LOC110524678
LOC110523023 mRNA upstream 150036 83798816 ~ 83800505 (-) True LOC110523023
XM_021604541.2 mRNA upstream 155520 83804300 ~ 83825419 (-) False LOC110524685
XM_021604543.2 mRNA upstream 155520 83804300 ~ 83825419 (-) False LOC110524685
XM_021604544.2 mRNA upstream 155520 83804300 ~ 83825419 (-) False LOC110524685
XM_021604545.2 mRNA upstream 155520 83804300 ~ 83825419 (-) False LOC110524685
TU507137 other downstream 122086 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 322644 83317513 ~ 83319715 (-) False G447993
TU507017 other downstream 322644 83318636 ~ 83319715 (-) True G447993
TU506105 other downstream 1251135 82390655 ~ 82391224 (-) True G447220
TU505560 other downstream 1698748 81943285 ~ 81943611 (-) True G446775
TU507522 other upstream 222822 83871602 ~ 83873308 (-) True G448411
TU507563 other upstream 267356 83916136 ~ 83916641 (-) True G448452
TU510077 other upstream 1694008 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1796901 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1838062 85486842 ~ 85487158 (-) True G450752

Expression Profile