RNA id: TU507344


Basic Information

Item Value
RNA id TU507344
length 512
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G448272
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 83727472 ~ 83727983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atataaacatgcacccagaagacagctcaatataaacatgcacccagaagacagctcaatctaaacattcatccagaaagcAGCAGAagtcagctcaatctaaacatgcaccctgatgaagagctcaatctaaacatgcaaccagaagccagctcaatataaacatgcaactagaaggcagctcaatctaaacatggacccagaagccagctcaatctaaacattaaTCCAGAAGCCagttcaatctaaacatgcaaccagaagccagctcaatgtaaacatgcacccagaagacagatcaatataaacatgcaactagaagccagctcaatataaacatgcacccagaagacagctcaatataaacatgcaactagaaggtaggtcaatctaaacattcatccagaagccagctcaatatgaacatgcacccagaagccaactcaatataaacatgcacccagaagacagctcaatataaacatgcagcTAGAAGGCAgatcaatctaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU507324 lncRNA downstream 29166 83698050 ~ 83698306 (-) True G448252
TU507314 lncRNA downstream 40303 83686932 ~ 83687169 (-) True G448242
TU507279 lncRNA downstream 78692 83642359 ~ 83648780 (-) False G448210
TU507280 lncRNA downstream 78692 83642359 ~ 83648780 (-) False G448210
TU507282 lncRNA downstream 78692 83642359 ~ 83648780 (-) True G448210
TU507366 lncRNA upstream 33798 83761781 ~ 83769470 (-) True G448289
TU507373 lncRNA upstream 43964 83771947 ~ 83772719 (-) True G448296
TU507379 lncRNA upstream 49023 83777006 ~ 83777219 (-) True G448302
TU507478 lncRNA upstream 121719 83849702 ~ 83855550 (-) False G448378
TU507479 lncRNA upstream 121719 83849702 ~ 83855550 (-) False G448378
XM_021604538.2 mRNA downstream 65509 83635307 ~ 83661963 (-) True LOC110524682
XM_036978568.1 mRNA downstream 127750 83584736 ~ 83599722 (-) True LOC110524681
XM_021604537.2 mRNA downstream 127759 83584736 ~ 83599713 (-) False LOC110524681
XM_036976501.1 mRNA downstream 421230 83250984 ~ 83306242 (-) False adcyap1r1b
NM_001124641.1 mRNA downstream 421269 83241207 ~ 83306203 (-) False adcyap1r1b
LOC110523023 mRNA upstream 70833 83798816 ~ 83800505 (-) True LOC110523023
XM_021604541.2 mRNA upstream 76317 83804300 ~ 83825419 (-) False LOC110524685
XM_021604543.2 mRNA upstream 76317 83804300 ~ 83825419 (-) False LOC110524685
XM_021604544.2 mRNA upstream 76317 83804300 ~ 83825419 (-) False LOC110524685
XM_021604545.2 mRNA upstream 76317 83804300 ~ 83825419 (-) False LOC110524685
TU507137 other downstream 207199 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 407757 83317513 ~ 83319715 (-) False G447993
TU507017 other downstream 407757 83318636 ~ 83319715 (-) True G447993
TU506105 other downstream 1336248 82390655 ~ 82391224 (-) True G447220
TU505560 other downstream 1783861 81943285 ~ 81943611 (-) True G446775
TU507522 other upstream 143619 83871602 ~ 83873308 (-) True G448411
TU507563 other upstream 188153 83916136 ~ 83916641 (-) True G448452
TU510077 other upstream 1614805 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1717698 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1758859 85486842 ~ 85487158 (-) True G450752

Expression Profile