RNA id: TU507522


Basic Information

Item Value
RNA id TU507522
length 1707
RNA type TUCP
GC content 0.41
exon number 1
gene id G448411
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 83871602 ~ 83873308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtgtatattggtttctaacttccctgaaaagttgcatatcacgggggctgttcgatgctaatgcagaacgccataggatgtttttgtgaaccaagggctatatctgttcctggttctccattttttgaatgggccatgcttatttaagatggtgaggaaggcatttaaaataaaaaaacaggcatcctctactgacaggatgaggtcaatatccttccaacatacccgggccaggtcgattagaagttttgtcgcaccttgactactgttcagtcgtgtggtcaggtaccACAAAAAATTGTAATTTGctcagaacagagcggcacagagagctaatattaataatctgcatgtcaatctctcatggatCAAGGTGGAGGAgatattgacttcatcactacttgtatttatgagaggtattgacatgttgaatataCCAAGCTGTctatctaaactactggcacacagctcggacacccatgcataccccacaagacatgccacaagaggtctcttcacagtccccaagtccagaacagactatgggaggtgcacagtactacatagaaccatgacgacatggaactctattccacatcaagtaactaatGCCAGCAGTAATAGAAGAttgaaaaaacagataaaaaaaacatattatgGAACACAttgtggaacagcggggactgtgacgCAACACtcacataggcacagacacatgcatacacacaaacacacacacacattgatttagtactgtagatatgtggtggtggtggtggagtaggggcctgaggacacacagtgtgttgtgaaatctgtgaatgtatagtaatgtttttttaattatgtaaactgccttcattttgcacgaccccgggaagagtagctgctgccttggcaggaactaatggagaaccataataaacccctggaagagtagctgctgccttggaaggaactaatggggatccataataaaccccaggaagagtagctgctgccttggcaggaactaatggggatccaaaataaatacaaatgcaaaAGAGTTATGTTGCTCGTCCTAATTTAGGCCTACTTTGCTCCAGTATGCAGAAGTATTTCATTGCTGGGCAAAAATAAGGAATTAGTGGTATCATGTGCCCAAGCTGTTTTACAGACAATGATGAGCCTCTAGCTGCAGTCGCTTTTTTGCAAAGGAGGTGTTGGTTGTTCTGTTTGGTATGTGAAATGTTTGTCAACAAAATGTGTTTGTCTCAATCTTTGACTGATTTAAACAATGTGTGCTACTGTGAGGtgccaaataaaatgtttttgtattgtttttgttttatcaggCATATAATGATAGCCGGTTGTGTATCATGCACACAAAAACCTGTAGGGTTTATATTCAGAGAACAGAAATGTCTGAATCAGCTGTCGATTGACTTTGTACATAATGGTTGTCAATAATGTCGCTGTTTACAAATGACAGATGTGTGCTTTTGTCTGGTGAGGCATTGAGAATCCTGATGTAATGTTGTGGTTTGATTAAATACAACAGGATTGCTTCATGTTATGGGCAGCTTCAGTAAAACTCAATGTTTCATCTACCACCATAATGAATTCAATATTTTCCAAATAGTGAAAATGACAGCACTGTGTAAGGATGCACCTTTTAACTCTGCCAGATGCACTGTTTACTTATTGATGGTAGTAGGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU507524 lncRNA downstream 221 83870989 ~ 83871381 (-) True G448413
TU507498 lncRNA downstream 10125 83861152 ~ 83861477 (-) True G448387
TU507495 lncRNA downstream 12475 83858695 ~ 83859127 (-) True G448384
TU507478 lncRNA downstream 16052 83849702 ~ 83855550 (-) False G448378
TU507479 lncRNA downstream 16052 83849702 ~ 83855550 (-) False G448378
TU507525 lncRNA upstream 6691 83879999 ~ 83880522 (-) False LOC110522893
TU507529 lncRNA upstream 13404 83886712 ~ 83886971 (-) True G448418
TU507531 lncRNA upstream 16481 83889789 ~ 83890023 (-) True G448420
TU507533 lncRNA upstream 17813 83891121 ~ 83891358 (-) True G448422
TU507526 lncRNA upstream 23188 83896496 ~ 83896835 (-) True LOC110522893
XM_021604542.2 mRNA downstream 46142 83804300 ~ 83825460 (-) False LOC110524685
XM_021604541.2 mRNA downstream 46183 83804300 ~ 83825419 (-) False LOC110524685
XM_021604543.2 mRNA downstream 46183 83804300 ~ 83825419 (-) False LOC110524685
XM_021604544.2 mRNA downstream 46183 83804300 ~ 83825419 (-) False LOC110524685
XM_021604545.2 mRNA downstream 46183 83804300 ~ 83825419 (-) False LOC110524685
XM_021601344.2 mRNA upstream 7173 83880481 ~ 83896988 (-) False LOC110522893
XM_036978571.1 mRNA upstream 192866 84066174 ~ 84098960 (-) False podn
XM_036978572.1 mRNA upstream 192866 84066174 ~ 84120343 (-) False podn
XM_036978573.1 mRNA upstream 194228 84067536 ~ 84098962 (-) True podn
XR_005051880.1 mRNA upstream 215684 84088992 ~ 84090407 (-) True LOC118964673
TU507137 other downstream 351329 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 551887 83317513 ~ 83319715 (-) False G447993
TU507017 other downstream 551887 83318636 ~ 83319715 (-) True G447993
TU506105 other downstream 1480378 82390655 ~ 82391224 (-) True G447220
TU505560 other downstream 1927991 81943285 ~ 81943611 (-) True G446775
TU507563 other upstream 42828 83916136 ~ 83916641 (-) True G448452
TU510077 other upstream 1469480 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1572373 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1613534 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 2004425 85877733 ~ 85878974 (-) True G450957

Expression Profile