RNA id: TU508371


Basic Information

Item Value
RNA id TU508371
length 1463
lncRNA type intronic
GC content 0.40
exon number 2
gene id G449182
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84230646 ~ 84232680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacactgcataatgatctgcatgttattgtgtcagtcaggggaaaacactgcataatgatctgcatgtcattgtgtcagtcaggagaaaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgtcattgtgtcagtcaggagaaaacactgcataatgatctgcatgtcattgtgtcagtcaggagAAAACAcggcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgtcattgtgtcagtcaggagaaaacactgcataatgatctgcatgtcattgtgtcagtaaggggaaaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgttgTGTCAGTATGAGgacaacactgcataatgatctgcatgtcattgtgtcagtatgaggacaacactgcataatgatctgcatgtcattgtgtcagtcaggagaaaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgttgTGTCAGTATGAGgacaacactgcataatgatctgcatgttatTGTGTCAGTCAGGAGAAAACAcggcataatgatctgcatgttattgtgtcagtatgaggacaacactgcataatgatctgcatgttatTGTGTCAGTCAGGAGAAAACAcggcataatgatctgcatgttattgtgtcagtatgaggacaacactgcataatgatctgcatgttattgtgtcagtatgaggacaacactgcataatgatctgcatgtcATTGTGTCAGTATGAGgacaacactgcataatgatctgcatgttattgtgtcagtatGAGGACagcactgcataatgatctgcatgttattgtgtcagtatgaggacaacactgcataatgatctgcatctTATTGTGTCAGTCAGGAGAAAACACTgcatgttattgtgtcagtatGAGGACagcactgcataatgatctgcatattattgtgtcagtcaggagaaaacactgcataatgatatgcatgttattgtgtcagtatgaggacaacactgcataatgatctgcatgttattgtgtcagtcaggagaaaacactgcataatgatctgcatgttattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508375 lncRNA downstream 9649 84187739 ~ 84220997 (-) True G449186
TU508366 lncRNA downstream 11465 84217953 ~ 84219181 (-) True G449177
TU508374 lncRNA downstream 18721 84210809 ~ 84211925 (-) True G449185
TU508356 lncRNA downstream 22383 84179877 ~ 84208263 (-) True G449168
TU508367 lncRNA downstream 23489 84206284 ~ 84207157 (-) True G449178
TU508369 lncRNA upstream 1339 84234019 ~ 84253939 (-) True G449180
TU508361 lncRNA upstream 2383 84235063 ~ 84255123 (-) True G449172
TU508413 lncRNA upstream 36005 84268685 ~ 84268906 (-) True G449224
TU508414 lncRNA upstream 36712 84269392 ~ 84269615 (-) True G449225
TU508417 lncRNA upstream 38966 84271646 ~ 84271980 (-) True G449228
XM_021604553.2 mRNA downstream 56993 84158137 ~ 84173653 (-) True LOC110524694
XM_021604552.2 mRNA downstream 73282 84151778 ~ 84157364 (-) True magoh
XM_021604549.2 mRNA downstream 91818 84121349 ~ 84138828 (-) True scp2b
XR_005051879.1 mRNA downstream 139174 84090546 ~ 84091472 (-) True LOC118964672
XR_005051880.1 mRNA downstream 140239 84088992 ~ 84090407 (-) True LOC118964673
XR_002473634.2 mRNA upstream 3005 84235685 ~ 84238143 (-) True LOC110524696
trnar-acg-4 mRNA upstream 77250 84309930 ~ 84310002 (-) True trnar-acg-4
XR_005051593.1 mRNA upstream 91300 84323980 ~ 84326565 (-) False LOC110522894
XM_036978584.1 mRNA upstream 94151 84326831 ~ 84348966 (-) False LOC110524701
XM_021604566.2 mRNA upstream 94151 84326831 ~ 84349221 (-) False LOC110524701
TU507563 other downstream 314005 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 357338 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 710373 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 910931 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 1110108 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1213001 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1254162 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1645053 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2316158 86548838 ~ 86549878 (-) True G451271

Expression Profile