RNA id: TU508413


Basic Information

Item Value
RNA id TU508413
length 222
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G449224
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84268685 ~ 84268906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcctataattcctataataactacaacctaaaacctcttacctgggaatattgaagactcatgttaaaagtaaccaccagctttcatatgttctcatgttctgagcaaggaacttaaacgttagcttttttacatggcacatattgcacttttactttcttctccaacactttgtttttgcattatttaaaccaaattgaacatgtttcattatttatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508361 lncRNA downstream 13562 84235063 ~ 84255123 (-) True G449172
TU508369 lncRNA downstream 14746 84234019 ~ 84253939 (-) True G449180
TU508371 lncRNA downstream 36005 84230646 ~ 84232680 (-) True G449182
TU508375 lncRNA downstream 47688 84187739 ~ 84220997 (-) True G449186
TU508414 lncRNA upstream 486 84269392 ~ 84269615 (-) True G449225
TU508417 lncRNA upstream 2740 84271646 ~ 84271980 (-) True G449228
TU508418 lncRNA upstream 3308 84272214 ~ 84273173 (-) True G449229
TU508423 lncRNA upstream 13401 84282307 ~ 84282698 (-) True G449234
TU508399 lncRNA upstream 17809 84286715 ~ 84288298 (-) True G449210
XR_002473634.2 mRNA downstream 30542 84235685 ~ 84238143 (-) True LOC110524696
XM_021604553.2 mRNA downstream 95032 84158137 ~ 84173653 (-) True LOC110524694
XM_021604552.2 mRNA downstream 111321 84151778 ~ 84157364 (-) True magoh
XM_021604549.2 mRNA downstream 129857 84121349 ~ 84138828 (-) True scp2b
XR_005051879.1 mRNA downstream 177213 84090546 ~ 84091472 (-) True LOC118964672
trnar-acg-4 mRNA upstream 41024 84309930 ~ 84310002 (-) True trnar-acg-4
XR_005051593.1 mRNA upstream 55074 84323980 ~ 84326565 (-) False LOC110522894
XM_036978584.1 mRNA upstream 57925 84326831 ~ 84348966 (-) False LOC110524701
XM_021604566.2 mRNA upstream 57925 84326831 ~ 84349221 (-) False LOC110524701
XM_036978585.1 mRNA upstream 57925 84326831 ~ 84349222 (-) False LOC110524701
TU507563 other downstream 352044 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 395377 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 748412 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 948970 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 1073882 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1176775 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1217936 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1608827 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2279932 86548838 ~ 86549878 (-) True G451271

Expression Profile