RNA id: TU508418


Basic Information

Item Value
RNA id TU508418
length 960
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G449229
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84272214 ~ 84273173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaaaattattcagcccccttaataaggatatggcagacatatgccccctttggagagattgggtacccctagtaaacggaaaaaaaaatctgtcaaaaatggctaatatatgcatataataattattattggatagaaaacactctaaagctcctaaaaccgttggaattatgtctgtaagtatagcagaactcacagggcaggcattcttccaaactagtttttgtggtcatgaaagttggagcaactttgacgtcatcgcccccacccttcccaaccagttatgattctggggagactttctatctcttccgctagatgtcctctttcagtagagctttgaatcgttcaaatcccgcgagaattgaccctatgggagtgaaattagtgcgtgccacgagaaaataggttgtgcgttgtggcgcgaattggtcccagccattcctttgttccagcactcaagagaagggcagacgatggccgattgaattgaagtttgttttgtgtgtctaaaacatcataaagcttgcttctgcacttagtttgacctgtttagtcgacatataatatgtaattttgaagttttgatgcgcaacttttccggaccagaggacgttttgggtgcatttcagctgatgttattagcagtagctaatacaaagacgcaagacttgaaaccaaacgatgtattgggtaagtatgaagccttccagaacattctgaacgaagaccatcgaaggtaagggaatatttatgctgaaatctgtgtttctgttgactccaacattacgtagaaatgtagcttgtatctgagcgccgtctcagcatattgaatagtgtgcgatttctgtaacgttaaaaataaatctaacaaagcggttgcataaagaagcagtgtatctttctaactatatgtagaacatgtatatttagtcaaagtttatgatgtctatttacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508417 lncRNA downstream 234 84271646 ~ 84271980 (-) True G449228
TU508414 lncRNA downstream 2599 84269392 ~ 84269615 (-) True G449225
TU508413 lncRNA downstream 3308 84268685 ~ 84268906 (-) True G449224
TU508361 lncRNA downstream 17091 84235063 ~ 84255123 (-) True G449172
TU508369 lncRNA downstream 18275 84234019 ~ 84253939 (-) True G449180
TU508423 lncRNA upstream 9134 84282307 ~ 84282698 (-) True G449234
TU508399 lncRNA upstream 13542 84286715 ~ 84288298 (-) True G449210
TU508427 lncRNA upstream 15377 84288550 ~ 84288768 (-) True G449238
TU508432 lncRNA upstream 20815 84293988 ~ 84294288 (-) True G449243
TU508448 lncRNA upstream 47140 84320313 ~ 84320527 (-) True G449258
XR_002473634.2 mRNA downstream 34071 84235685 ~ 84238143 (-) True LOC110524696
XM_021604553.2 mRNA downstream 98561 84158137 ~ 84173653 (-) True LOC110524694
XM_021604552.2 mRNA downstream 114850 84151778 ~ 84157364 (-) True magoh
XM_021604549.2 mRNA downstream 133386 84121349 ~ 84138828 (-) True scp2b
XR_005051879.1 mRNA downstream 180742 84090546 ~ 84091472 (-) True LOC118964672
trnar-acg-4 mRNA upstream 36757 84309930 ~ 84310002 (-) True trnar-acg-4
XR_005051593.1 mRNA upstream 50807 84323980 ~ 84326565 (-) False LOC110522894
XM_036978584.1 mRNA upstream 53658 84326831 ~ 84348966 (-) False LOC110524701
XM_021604566.2 mRNA upstream 53658 84326831 ~ 84349221 (-) False LOC110524701
XM_036978585.1 mRNA upstream 53658 84326831 ~ 84349222 (-) False LOC110524701
TU507563 other downstream 355573 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 398906 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 751941 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 952499 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 1069615 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1172508 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1213669 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1604560 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2275665 86548838 ~ 86549878 (-) True G451271

Expression Profile