RNA id: TU508630



Basic Information


Item Value
RNA id TU508630
length 213
lncRNA type intronic
GC content 0.50
exon number 1
gene id G449412
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84604918 ~ 84605130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTCAGAAGTTGTATGTAGGTTAACATGGATGACAACAGGAGTCTAGATGGTGTAGGTCTCTACTGTAATTGAATTAGTGTTGACAGCTGGGATGTGACTTAAATCAAGAAGGGTGGTGGAGGGGgcaggagctctctctctctttagcccCCTTTGACTCAGAGACATTCCTCCGGGGCTGTGAGGGCTTTGGCAGGACCCCGTGTCCACag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU508626 lncRNA downstream 4357 84600360 ~ 84600561 (-) True G449408
TU508621 lncRNA downstream 8605 84595287 ~ 84596313 (-) True G449403
TU508619 lncRNA downstream 9642 84594909 ~ 84595276 (-) True G449402
TU508618 lncRNA downstream 10134 84594547 ~ 84594784 (-) True G449401
TU508617 lncRNA downstream 10379 84594294 ~ 84594539 (-) True G449400
TU508739 lncRNA upstream 226075 84831205 ~ 84843159 (-) True G449512
TU508749 lncRNA upstream 262132 84867262 ~ 84867491 (-) True G449522
TU509879 lncRNA upstream 367658 84972788 ~ 84973196 (-) True G450494
TU509912 lncRNA upstream 442116 85047246 ~ 85047496 (-) True G450525
TU509918 lncRNA upstream 446810 85051940 ~ 85053338 (-) False G450528
XM_021604583.2 mRNA downstream 73607 84520767 ~ 84531311 (-) True mcoln3b
XM_021604582.2 mRNA downstream 73999 84520767 ~ 84530919 (-) False mcoln3b
XM_036979072.1 mRNA downstream 185596 84393650 ~ 84419322 (-) True LOC110523024
XM_021604571.2 mRNA downstream 211891 84389475 ~ 84393027 (-) True henmt1
XM_021604565.2 mRNA downstream 242225 84350936 ~ 84362693 (-) True slc25a24
XM_021604587.2 mRNA upstream 88465 84693595 ~ 84697943 (-) True LOC110524711
XM_036978598.1 mRNA upstream 104802 84709932 ~ 84862159 (-) True ddah1
XM_021604591.2 mRNA upstream 274873 84880003 ~ 84933122 (-) True znhit6
XM_036978599.1 mRNA upstream 328876 84934006 ~ 85175437 (-) True LOC110524715
XM_036978600.1 mRNA upstream 495118 85100248 ~ 85101922 (-) True LOC118964676
TU507563 other downstream 688277 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 731610 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 1084645 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 1285203 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 737658 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 840551 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 881712 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1272603 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 1943708 86548838 ~ 86549878 (-) True G451271

Expression Profile