RNA id: TU509912


Basic Information

Item Value
RNA id TU509912
length 251
lncRNA type intronic
GC content 0.57
exon number 1
gene id G450525
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 85047246 ~ 85047496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCCGCTGGAGGAGATGGTAGAGTTGCTGGTGGGAGGGTAGGTGGGGTAgtagggagaccactcctctcccaacggtccatcctctccatcatttgatCCATCGCTGATCCGATGCGATGGAGGATGGACGTGTGAtgaaggactctctcctccatcgtggggagaggggtggtcgctgctcctgctgattccataaggttggtgcgggcttctgtaacgctcaatgagtgaatgggtgtggagtcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509879 lncRNA downstream 74050 84972788 ~ 84973196 (-) True G450494
TU508749 lncRNA downstream 179755 84867262 ~ 84867491 (-) True G449522
TU508739 lncRNA downstream 204087 84831205 ~ 84843159 (-) True G449512
TU508630 lncRNA downstream 442116 84604918 ~ 84605130 (-) True G449412
TU508626 lncRNA downstream 446685 84600360 ~ 84600561 (-) True G449408
TU509918 lncRNA upstream 4444 85051940 ~ 85053338 (-) False G450528
TU509919 lncRNA upstream 4444 85051940 ~ 85053338 (-) False G450528
TU509922 lncRNA upstream 4444 85051940 ~ 85053338 (-) True G450528
TU510041 lncRNA upstream 231828 85279324 ~ 85280531 (-) True G450640
TU510044 lncRNA upstream 233038 85280534 ~ 85292644 (-) True G450643
XM_021604591.2 mRNA downstream 114124 84880003 ~ 84933122 (-) True znhit6
XM_036978598.1 mRNA downstream 185087 84709932 ~ 84862159 (-) True ddah1
XM_021604587.2 mRNA downstream 349303 84693595 ~ 84697943 (-) True LOC110524711
XM_021604584.2 mRNA downstream 376788 84586021 ~ 84670458 (-) True syde2
XM_021604586.2 mRNA downstream 376794 84586021 ~ 84670452 (-) False syde2
XM_036978600.1 mRNA upstream 52752 85100248 ~ 85101922 (-) True LOC118964676
XM_036979076.1 mRNA upstream 387633 85435129 ~ 85443236 (-) True LOC118964733
XM_036978603.1 mRNA upstream 396000 85443496 ~ 85472422 (-) False lurap1
XM_021604598.2 mRNA upstream 455471 85502967 ~ 85511477 (-) True LOC110524719
XM_036978612.1 mRNA upstream 484194 85531690 ~ 85652797 (-) True sgip1a
TU507563 other downstream 1130605 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 1173938 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 1526973 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 1727531 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 295292 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 398185 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 439346 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 830237 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 1501342 86548838 ~ 86549878 (-) True G451271

Expression Profile