RNA id: TU510080


Basic Information

Item Value
RNA id TU510080
length 1505
lncRNA type read_through
GC content 0.39
exon number 2
gene id G450679
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 85344855 ~ 85410972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGATTGATGATTTTCCTGGGCCAGGGGTTCCATAAAGAACTCAGACAGCATTGTCTGCTGCTTCAAGTGATTttgaacagagcagagcagatatTACCTGTTATAACTATGGCTGAGAGATTGGCATATAGTATTCTAATCATGTTAATGAAATTAGAGCCAATTCCCATATGTTCCAAGATCAACCAGAGGCATTAACAGTCAAGTCTATCAAAGCTTTTTCTGCATCAAGAGATAAAACAGCCCAAGGAGCTGTTGTTTCTTTTGAAGCATTGTTGACATGTAACAGGCGCTGGCGATTGTCCGTGGATTAACGTTTTTTAACAAACCCGCTTTAACAAACCAATTTGGGAAAGAAAGTCTCGAGACGGGATGACAACATTTTGGAAAACAGTTAAATATCTATGTTTATCAAAGATGGGGGCGAGAGTCAGGACACTGAGTGGTATCCTTACTTTACAATTATAAGCCGACATTTGTGCTTCATTCACCTTTCCCAAATGTTAGTTATTTAGAGCAAAAGTGAACCTAATTGATTTCAATATTTGAAATAGACCTCAGGGGGagtagaaggagaagaaggagaatcTTTGATTCATTTGGGTTCTGATAGTAATTCCTCTGTTTCAGATTCAGAAGTTGCTATATCAACTAATTGGTCATTACTGCGTAGTTTGTTAGCCAGTAAATGACTGGGGCGATTACCTGATGGATGGCACATTTTGCTCTGTCTTCTCAGTAAATACAATTCTGTCTTGCCTTTGGAAAGGGTAATAGCTTTCAAATTCAGAGACAGAATAGCTCGCGTTGTCATTGTTTTTTTTAGAAAGGAATGTTAGATTAATTATACAATTATCTTTAGTGTTGATAAGCCCATGGATGTATTCGTGCTGTTAATTGTTACAGAAAGCTTGTAGAGACCTGTGTCTCTGTGAAGTTGGGAGTCTGTTGAGTCGCATCCTGGTTACAACTAGCACAGCAATAATGACTGCAGCAGTACCAATGACTGATACAACCACTGCTACTACATTTGATCCAGAGGACCGCTTTAGGTTTGGACTTGGATATTGTGATATCGTAGGCGTAGTTGTAGTTGGAACAAATGGTACAATTTTTGTGGCTTTAGCAACATTAGACATGTCAGACATCAGAGAATCCTTGTCACAAGAACGTACAGCAAAGAACATGACCGTCTCGGGTTCAGCATTGATGATGTAACTGGAAAGGAAGGAGTATTCCTCTGTAGAGCCTGCCTCTAGTGGTCGGATGTCGGAGGTGTTCATTAGATGTGCTCCACTGAAATTTCCTCTCAGGGCTTCCAAGTCCATGCTGACTCTGATCTCATAGGAATCAGCTGAAAGAAATGAAGCAGGACAAAGTGGAAAGGGAAAATTCAGGTTATAACACATATTCATGAGATTCACACATGGTTATTCAATGCAAATGTCTGATCTCATCTAGAAAGTGTTATGGTAAATAATGATTTCAGGATCAGTATGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU510078 lncRNA downstream 1175 85343362 ~ 85343680 (-) True G450677
TU510074 lncRNA downstream 5696 85338840 ~ 85339159 (-) True G450673
TU510072 lncRNA downstream 6987 85337623 ~ 85337868 (-) True G450671
TU510044 lncRNA downstream 52211 85280534 ~ 85292644 (-) True G450643
TU510041 lncRNA downstream 64324 85279324 ~ 85280531 (-) True G450640
TU510128 lncRNA upstream 34906 85445878 ~ 85446785 (-) False lurap1
TU510129 lncRNA upstream 34906 85445878 ~ 85446785 (-) False lurap1
TU510130 lncRNA upstream 34906 85445878 ~ 85446785 (-) False lurap1
TU510132 lncRNA upstream 34906 85445878 ~ 85446785 (-) False lurap1
TU510134 lncRNA upstream 34906 85445878 ~ 85446785 (-) False lurap1
XM_036978599.1 mRNA downstream 169418 84934006 ~ 85175437 (-) True LOC110524715
XM_036978600.1 mRNA downstream 242933 85100248 ~ 85101922 (-) True LOC118964676
XM_021604591.2 mRNA downstream 411733 84880003 ~ 84933122 (-) True znhit6
XM_036978598.1 mRNA downstream 482696 84709932 ~ 84862159 (-) True ddah1
XM_021604587.2 mRNA downstream 646912 84693595 ~ 84697943 (-) True LOC110524711
XM_036979076.1 mRNA upstream 24157 85435129 ~ 85443236 (-) True LOC118964733
XM_036978603.1 mRNA upstream 32524 85443496 ~ 85472422 (-) False lurap1
XM_021604598.2 mRNA upstream 91995 85502967 ~ 85511477 (-) True LOC110524719
XM_036978612.1 mRNA upstream 120718 85531690 ~ 85652797 (-) True sgip1a
XM_021604606.2 mRNA upstream 271337 85682309 ~ 85695967 (-) False pde4ba
TU510077 other downstream 1783 85342788 ~ 85343072 (-) True G450676
TU507563 other downstream 1428214 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 1471547 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 1824582 83510353 ~ 83520273 (-) True G448079
TU507017 other downstream 2025140 83318636 ~ 83319715 (-) True G447993
TU510133 other upstream 34709 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 75870 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 466761 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 1137866 86548838 ~ 86549878 (-) True G451271
TU510765 other upstream 1186380 86597352 ~ 86597744 (-) True G451286

Expression Profile