RNA id: TU509493


Basic Information

Item Value
RNA id TU509493
length 282
lncRNA type intronic
GC content 0.37
exon number 1
gene id G450181
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86132077 ~ 86132358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtataaatacagacacagctgtctgtgtgtcACCTGGTCAGATATGTTTGCTGCATGTTTTCTTTAAGTGAAAAAACAactaatgtgtatatatatttttgccttcttatttgttatttttttcatcCAGGCTGTATAGCTTATACGCACTgccctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtaattgccaacaaagggtatataacaaagtattgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509317 lncRNA upstream 285954 85845593 ~ 85846123 (+) True G450023
TU509310 lncRNA upstream 300497 85831277 ~ 85831580 (+) True G450016
TU509308 lncRNA upstream 303174 85828676 ~ 85828903 (+) True G450014
TU509298 lncRNA upstream 318308 85813541 ~ 85813769 (+) True G450004
TU509297 lncRNA upstream 319516 85812336 ~ 85812561 (+) True G450003
TU509516 lncRNA downstream 29063 86161421 ~ 86190479 (+) False G450199
TU509515 lncRNA downstream 55038 86187396 ~ 86190479 (+) True G450199
TU509532 lncRNA downstream 69811 86202169 ~ 86218435 (+) True G450214
TU509609 lncRNA downstream 127622 86259980 ~ 86261531 (+) True LOC110524728
TU509632 lncRNA downstream 186827 86319185 ~ 86321493 (+) False G450273
XR_005051882.1 mRNA upstream 473169 85656730 ~ 85658908 (+) False LOC118964678
XM_036978608.1 mRNA upstream 606127 85516464 ~ 85525950 (+) False dnai4
XR_005051946.1 mRNA downstream 93533 86225891 ~ 86225945 (+) True LOC118964753
XR_002473637.2 mRNA downstream 127744 86260102 ~ 86262152 (+) False LOC110524728
XM_036978622.1 mRNA downstream 132070 86264428 ~ 86343384 (+) True jak1
XR_005051884.1 mRNA downstream 232381 86364739 ~ 86368940 (+) True LOC118964680
XM_021604623.2 mRNA downstream 961676 87094034 ~ 87103631 (+) False si:dkey-148h10.5
TU509067 other upstream 684502 85445964 ~ 85447575 (+) False G449809
TU509068 other upstream 684502 85445964 ~ 85447575 (+) True G449809
TU509026 other upstream 803135 85328572 ~ 85328942 (+) True G449774
TU507801 other upstream 1742476 84388093 ~ 84389601 (+) False LOC118964674
TU507838 other upstream 1829604 84302100 ~ 84302473 (+) True G448698
TU509709 other downstream 336180 86468538 ~ 86468937 (+) True G450333
TU509699 other downstream 422115 86554473 ~ 86556047 (+) False G450331
TU509700 other downstream 422570 86554928 ~ 86556047 (+) False G450331
TU509774 other downstream 463789 86596147 ~ 86596515 (+) True G450394
TU510894 other downstream 711518 86843876 ~ 86844271 (+) True G451408

Expression Profile