RNA id: TU509516


Basic Information

Item Value
RNA id TU509516
length 2525
lncRNA type read_through
GC content 0.43
exon number 2
gene id G450199
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86161421 ~ 86190479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacaaacacacacatacatacagtacatacatactacACAGCCACAGCTTCTGCCATTGGTATAGTCACCAGAGAAAGCAGAGAATACAGTGGACAGACAGTCTCTTTAGTTATATACTGGTCAGTGGTCAGTCAGTGCTCACATTAGTCGACAACTCAGGTGTGGCCTTTTCACAGAGGAAACGGTTGACAGAGTAGGCtggtcctcctatagctcctctcaccagcctcctctggttgaCAACATCAGTATGCAGGGGataaaacagggaaatggttgtATCAGATGAAATAGATGTGCCAGTCTACCAAATGCATTGTTTTACACAGATAAGGGTTAGAGGGGGCCTATATTAGGATCTCACAAGCTTGATAGTGGTCCAATACACTCAAGTATAGTAATGTATTATGGAATGATGTGCCTCCATGTGTAGCAAGATAAAGTCAGTCCTGTAGTCCTTCCACTAGTTCTCCCAGTCAGTGAATGCAAAAAAGATATGCTTCAAACTAATGTAAATATAAAAGCCCTCATCAATGACAGGTTGCCTTTGATCAATCAGAATTTCATTTCAAATATTTGTCATGATTTAAAAGTAAACACTTTAGAGGATACAGCAAAGGATGAATAAGACAATACACCACCTGCATGTTACTAAACATTACCCGCAATAAAATGAAAGATTCTTCATTGGGAGGGACTGAATCATCTGAAATTAGTCAATAAATGAACATAATACAGAGTAAAACTACACATAACGATGATGAAGCTTCTTAGATAAGTACAGCAGTGTGATAGGGGATACTTTCTCTGATTGTGGATAATATCCTTTACACACAGGTTCTTTCAGACTGTAGACACTACATTTAcaggagaaattagggttaagtgccttgctcaagggcacatcaagtgattttttacctagtcagcgcggggatttgaaccagcaaccttccggttactagcacAACATGCTTAGccgcaaggctacctgccgcccactaGCAAGTGACTGTAAAGATGAGAGTGAGTACTGTATGTTTAAAGCTGGAATCGATAGCGGTCAAACTGCCATGTCCATTTGTGATATTACAAAGACGGTACTTCGGACATGATTGCACACTCGATAGAACAGCAGAGTTTTAAAAAACCAAGATGCTAGATGCTggatatcgctctctctctctgaactcctctcctctcttcgtaACAAATGTGCCTGGGGTGACCGGTGGCGCTGTTTCACCTAATGTGGATTCCAGATTTAAGACTGGTAATAGACTGCCGCGGAGTTTACTCTCTGTGTTAAAGCTAAAGACATTTTGCACCTTTCTGAGACGGAGGGCAAGAAAACACAAGAACCAACCACCGTAGGTAGTAAAGGTGGGGGTGCAACAACGAATATCCTGCCTACCTTCACCTACTAACTGCATGTCAAGTTGAGTCTCCAGGTTGTTGTCAGAACGAACACATGTTACCCCTGGCTTGCAATTATCTTGTTGTCTCCTAGAACTCTCCTGTGGAGTTCTGTGGAAGCACATTGATCTAAATTGGTAATTCAAATAACATAGATAACAGTAGCTTTTCCATGAAGATAGACAACTCAGGTGGAAACTCTGTGATCGCTCTATATTCAATTATTTGACATGGTATTTCTGAGATCACTGTGGTGTATAGACCTTACAGTCAGTGGTACAGTGCCTAATTGAATAGGCCATCCACTCCCAACACTGGCTCTAGATCTTCACTTCAAAGTCACACAGGTGACTGTGACAGGAACACTGTGTTAATGCTACTGTGTGTAAAACATTGGCATCGTCCTGCTCTATATAGCACCTGGCTAACAACACTGTGACCACAGGTATGTCATTATCACCTATGTCCGGTGTTAGGTGGACAGTATCACTCCGGCGATGTCTCCATAGACAGCTGGATGACTGCATTCATTGGTTCAGGACTCTTTGCTTGGTTCAGGACTCGGACATGTAGGACAGGGTTGAACAGTTCTTGTTGGACAGTTGGACAGTTCTGCCACCAGATACataggtaggtgggtaggtaggtatcTTTCTGTTAGTCTGGCTATTGAAGTCTCTATGGAGTAGAGTCCACAGGACAGTGAcaagaagagaaggagggggggaaTCAGATCCGGTGGGGGCTTGATTATTGATCACAGGGGGTCGGCAggaactctttctctctctccctctctctctctctcagctcagtAGAGTGCTTTTTGTCCTTGGCTGTCAAATTCTGACCAGGCATCATTCAGTTCCATAAAAATCATCTTGGCATATTGTTCATAGGGCTGTCCAGTGGCCTGGGAGAGGGGACAAGGAGGAAAACATCAGTCAGTCACGTTGTAATTTACTGCAGAGGTGAAAAGTGTATATTGTACAGAACCTCACTATATCATAtctggtgtttgtttgtttgtgtgtgtgtgtagaagaaTTATACCCGTAGGGGGTACAGGGGCACTTTCCCCACACAGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509493 lncRNA upstream 29063 86132077 ~ 86132358 (+) True G450181
TU509317 lncRNA upstream 315298 85845593 ~ 85846123 (+) True G450023
TU509310 lncRNA upstream 329841 85831277 ~ 85831580 (+) True G450016
TU509308 lncRNA upstream 332518 85828676 ~ 85828903 (+) True G450014
TU509298 lncRNA upstream 347652 85813541 ~ 85813769 (+) True G450004
TU509532 lncRNA downstream 11690 86202169 ~ 86218435 (+) True G450214
TU509609 lncRNA downstream 69501 86259980 ~ 86261531 (+) True LOC110524728
TU509632 lncRNA downstream 128706 86319185 ~ 86321493 (+) False G450273
TU509631 lncRNA downstream 129405 86319884 ~ 86321493 (+) True G450273
TU509585 lncRNA downstream 158876 86349355 ~ 86352935 (+) True G450237
XR_005051882.1 mRNA upstream 502513 85656730 ~ 85658908 (+) False LOC118964678
XM_036978608.1 mRNA upstream 635471 85516464 ~ 85525950 (+) False dnai4
XR_005051946.1 mRNA downstream 35412 86225891 ~ 86225945 (+) True LOC118964753
XR_002473637.2 mRNA downstream 69623 86260102 ~ 86262152 (+) False LOC110524728
XM_036978622.1 mRNA downstream 73949 86264428 ~ 86343384 (+) True jak1
XR_005051884.1 mRNA downstream 174260 86364739 ~ 86368940 (+) True LOC118964680
XM_021604623.2 mRNA downstream 903555 87094034 ~ 87103631 (+) False si:dkey-148h10.5
TU509067 other upstream 713846 85445964 ~ 85447575 (+) False G449809
TU509068 other upstream 713846 85445964 ~ 85447575 (+) True G449809
TU509026 other upstream 832479 85328572 ~ 85328942 (+) True G449774
TU507801 other upstream 1771820 84388093 ~ 84389601 (+) False LOC118964674
TU507838 other upstream 1858948 84302100 ~ 84302473 (+) True G448698
TU509709 other downstream 278059 86468538 ~ 86468937 (+) True G450333
TU509699 other downstream 363994 86554473 ~ 86556047 (+) False G450331
TU509700 other downstream 364449 86554928 ~ 86556047 (+) False G450331
TU509774 other downstream 405668 86596147 ~ 86596515 (+) True G450394
TU510894 other downstream 653397 86843876 ~ 86844271 (+) True G451408

Expression Profile