RNA id: TU509698



Basic Information


Item Value
RNA id TU509698
length 323
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G450331
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86554473 ~ 86558452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTTttatcacattcacattttatAACTGTATATGTTACACTGGAAGTTCTTTCAGTACATTAATTAAATTCATAGTGTTCGGTATACACAAGATTATACTTTCTTACAACAGCTGGTAAATACTGTTCATGCTCTCTCGTGTCAAAAACGTAATTACAATATAGTCTCAGTAAATGTAGCATTTGTTTTTCAGATTCAATCAAAAAATCTAAACATCAGACCCactgacagtaccagtcaaaaattgaAACCTAcccattcaagagtttttctttacttttactattttccacatacTACATTCCCATAttgagacatcaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU509744 lncRNA upstream 526 86553536 ~ 86553947 (+) True G450366
TU509742 lncRNA upstream 4969 86549023 ~ 86549504 (+) True G450364
TU509740 lncRNA upstream 6516 86547682 ~ 86547957 (+) True G450362
TU509739 lncRNA upstream 7308 86546927 ~ 86547165 (+) True G450361
TU509738 lncRNA upstream 12869 86541369 ~ 86541604 (+) True G450360
TU509702 lncRNA downstream 133 86554928 ~ 86557513 (+) False G450331
TU509704 lncRNA downstream 1310 86556105 ~ 86558452 (+) False G450331
TU509701 lncRNA downstream 1366 86556161 ~ 86558452 (+) True G450331
TU509745 lncRNA downstream 5107 86559902 ~ 86560257 (+) True G450367
TU509747 lncRNA downstream 5856 86560651 ~ 86561005 (+) True G450369
XR_005051884.1 mRNA upstream 185533 86364739 ~ 86368940 (+) True LOC118964680
XM_036978622.1 mRNA upstream 211089 86264428 ~ 86343384 (+) True jak1
XR_002473637.2 mRNA upstream 292321 86260102 ~ 86262152 (+) False LOC110524728
XR_005051946.1 mRNA upstream 328528 86225891 ~ 86225945 (+) True LOC118964753
XR_005051882.1 mRNA upstream 895565 85656730 ~ 85658908 (+) False LOC118964678
XM_021604623.2 mRNA downstream 539239 87094034 ~ 87103631 (+) False si:dkey-148h10.5
XR_002473639.2 mRNA downstream 539245 87094040 ~ 87107836 (+) False si:dkey-148h10.5
XM_036978633.1 mRNA downstream 539251 87094046 ~ 87099179 (+) False si:dkey-148h10.5
XM_021604626.2 mRNA downstream 539251 87094046 ~ 87103625 (+) False si:dkey-148h10.5
XM_021604622.2 mRNA downstream 539251 87094046 ~ 87103637 (+) False si:dkey-148h10.5
TU509709 other upstream 85536 86468538 ~ 86468937 (+) True G450333
TU509067 other upstream 1106898 85445964 ~ 85447575 (+) False G449809
TU509068 other upstream 1106898 85445964 ~ 85447575 (+) True G449809
TU509026 other upstream 1225531 85328572 ~ 85328942 (+) True G449774
TU507801 other upstream 2164872 84388093 ~ 84389601 (+) False LOC118964674
TU509700 other downstream 133 86554928 ~ 86556047 (+) False G450331
TU509774 other downstream 41352 86596147 ~ 86596515 (+) True G450394
TU510894 other downstream 289081 86843876 ~ 86844271 (+) True G451408
TU511538 other downstream 847027 87401822 ~ 87412639 (+) False dock7
TU511578 other downstream 866009 87420804 ~ 87422836 (+) True G451959

Expression Profile