RNA id: TU509701


Basic Information

Item Value
RNA id TU509701
length 2292
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G450331
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86554473 ~ 86558452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgagtaggtgtgtccaatcttttgactggtactgtatgttttggTGCCGTACCGTTGGAAATATGCACCAACCGACGTGACAAAATCGAGGTGTATATTCCCAGAGCTGTCTAGTGTTATGAGTAATGTCCAGTGCTATAATTTCAGTGCTGGTGGTTATGAACAGGACAGTAGGAGATAACTGTGACTAAAATGAATTACTGCTTTTAACTACCTACAGTGAGAGTAGAGTaccacaatatcccataatatgAGCTATAGGGTTAGGTGACATGGTATTATTATCCAATGAAAAGGAATTCTAGAACTAAAGTTGGGGTCAATTatatttcaattcaggaagtaacaCGATATTCAATTTCTAAGAATTGAAATGAAATTGATACATATCCTGTCTAGAACTAATCCAACTGAACGAACAGGGAGAAAGTTCCACTGCAGTCTAAAATAAAATCTCTTCTTGACAATTGATGTTGTCTTTTGTGACATTTTGACCCTACGTGGTTAAACAAAAATGAGATTTTTAAAGACTAACATCTTCAGCTTTAAGTGTCTAAAATACAACTATGTCAGTCTGTCTTCCATCCAATATGGACCTTAAGAAAGGTAGACCTAATAACATCCAAGGTGTCGCATACCATGAACTGAAAAATATCACAATAAACCCAAATATCTGAGCATCATTTTGAGTACACAATATTTCATTTCCAACATAAAAATATGGAGTGCAACACATGAATAGCTATTTGTGACTTTTAAAAAGTTATGTACACTTCTTACTGTATAGAtcgggggtaaaaaaaaaaacacgagaCATTCTTCACCCTAACTAAATGAATACAATAATGACTTGATTTGGAGAAGTTCATCCATGAATCACATGACAAAAAAACAATCATATCGGGGAAATTACTCGTCAGATAATCAGGCGGACTGCTGAAACAAAAATGATTTGATCTCTATTCACTAATTACACTTTCAAAACAATTAAACCATGTAATAATGCTTTCAATTGAGATGCTCTGACCACTTCCATACAAtcagaccaaacacacacaccccattacAGTTGCACAAGCTGTGTACACACACCTCCCTTTAACAGTGATAGGTCCCACTCAGgcatagagacagagagcatCATAGCTTGGCCCACCAGGTCCGGATGTTAGTGTGAGGGGGTCAGATAAGACAGACCAACCAATCCCTCTCACCAGCTCTATGCCTTAATGTTCAGGCAGATAACAGGCCACCAACGTGTGGGAATGGCTCTTCCTGTGTGTCTGAGTCATTCTGCCAGGGTCCTGGCATGGCCCTTCCATATTCAGTCATACAGCATCCTGTTGACACAAACCAGCCCTAGACTGGTAGGGTGGATTAGTGAATACAATGTATTGTATTCAGCTTGTTCAGTCAGGACAAAGAATTCAACTAATTTCACCTTCAAAACAATAACAATGATTTTCTCATTCTCTACTGAAAATAATCCAAAGGATAACATGTGTCAGATATGTGTTGAATAACCACTTCCTCTCCATGATGCATCCTTAACAGGAAGTGAGGGGCATGTGCAGCAGGGGCACTCTGTGGGCCATGATCAGCCACTGTGGTTACCTTGGCAACCAGAGTTCATTCAGTTCAGTTCCAGCCACTGTCAGGCGCTCATCTGATCACTCTCAAATCCAGTTCAATAAATAGTAGAAAAATAATCCTTTATTCTTATTTGTTATCTTCTTCTTAAAAATCTGAGATGCATTGTTTACACTTTTAAACAAGTTCAGACCCCTTTTGAATAAAAGAGGCCTCCACCACACCCCCCGTGTTTCTGAGCAGGGCTATACTGGGCTACAGAAGCTAGTGTTCCTCAACAGAGGTGGAGTGTGTGAACATTAAGGAGTCCTCCAGGAGGGGGACTGCTCTGTTCTCCCCAGCCCAACTCCTCTCACCCTGGCTTGGCACAGTGGGAGCACACATGGGTGGTGGAGTCTGGAgtttgtagtggtagtgttggaTGAATAGCTAGTAGTGATGTAGCCAGGCTTGGGAGAGGGCTGGTGGGGTTGGAGGAGAGCTGAGGCCTGTGTAGGGATCGGGTACAGAGGATCAGCACTCTGTGTCCACACTGTGCACAGTGACTGCTGCCTGCAGGTGGTGTGTGTGGAGCTGGTGGTGGGGCGGGTGGCGGTATGGGTGGAACTTGTGGCTGAGCAGCGCCGCCGTCTGAGGGGGCGTGTCCAGATCCAGGTCGTCATCGTGGTTCCCCACGTCCACGCCGGCCGACAAGGGGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509698 lncRNA upstream 1366 86554473 ~ 86554795 (+) False G450331
TU509744 lncRNA upstream 2214 86553536 ~ 86553947 (+) True G450366
TU509742 lncRNA upstream 6657 86549023 ~ 86549504 (+) True G450364
TU509740 lncRNA upstream 8204 86547682 ~ 86547957 (+) True G450362
TU509739 lncRNA upstream 8996 86546927 ~ 86547165 (+) True G450361
TU509745 lncRNA downstream 1450 86559902 ~ 86560257 (+) True G450367
TU509747 lncRNA downstream 2199 86560651 ~ 86561005 (+) True G450369
TU509749 lncRNA downstream 4379 86562831 ~ 86563073 (+) True G450371
TU509750 lncRNA downstream 5382 86563834 ~ 86564050 (+) True G450372
TU509751 lncRNA downstream 6133 86564585 ~ 86564798 (+) True G450373
XR_005051884.1 mRNA upstream 187221 86364739 ~ 86368940 (+) True LOC118964680
XM_036978622.1 mRNA upstream 212777 86264428 ~ 86343384 (+) True jak1
XR_002473637.2 mRNA upstream 294009 86260102 ~ 86262152 (+) False LOC110524728
XR_005051946.1 mRNA upstream 330216 86225891 ~ 86225945 (+) True LOC118964753
XR_005051882.1 mRNA upstream 897253 85656730 ~ 85658908 (+) False LOC118964678
XM_021604623.2 mRNA downstream 535582 87094034 ~ 87103631 (+) False si:dkey-148h10.5
XR_002473639.2 mRNA downstream 535588 87094040 ~ 87107836 (+) False si:dkey-148h10.5
XM_036978633.1 mRNA downstream 535594 87094046 ~ 87099179 (+) False si:dkey-148h10.5
XM_021604626.2 mRNA downstream 535594 87094046 ~ 87103625 (+) False si:dkey-148h10.5
XM_021604622.2 mRNA downstream 535594 87094046 ~ 87103637 (+) False si:dkey-148h10.5
TU509699 other upstream 114 86554473 ~ 86556047 (+) False G450331
TU509700 other upstream 114 86554928 ~ 86556047 (+) False G450331
TU509709 other upstream 87224 86468538 ~ 86468937 (+) True G450333
TU509067 other upstream 1108586 85445964 ~ 85447575 (+) False G449809
TU509774 other downstream 37695 86596147 ~ 86596515 (+) True G450394
TU510894 other downstream 285424 86843876 ~ 86844271 (+) True G451408
TU511538 other downstream 843370 87401822 ~ 87412639 (+) False dock7
TU511578 other downstream 862352 87420804 ~ 87422836 (+) True G451959
TU511628 other downstream 961772 87520224 ~ 87630763 (+) False kank4

Expression Profile