RNA id: TU509774


Basic Information

Item Value
RNA id TU509774
length 369
RNA type TUCP
GC content 0.56
exon number 1
gene id G450394
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86596147 ~ 86596515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaacatcctccaacatgaccggtttggcggtgggtcagtcatggtgtggggtggcatttctttggggggccacacagccctccatgtgctcgccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccccttgtgagaccatatgctggtgtggttggccctgggttcctcctaatgcaagacaatgctagacctcatgtggctggagtgtgtcagcagttcctgcaagaggaaggcattgatgctatggactggcccgcccgttcccctgacctgaatccaattgaacacatctgggacatcatgtctcgctccatccaccaacgccacgttgcaccacagactgtccaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509771 lncRNA upstream 4064 86591671 ~ 86592083 (+) True G450391
TU509770 lncRNA upstream 5528 86590329 ~ 86590619 (+) True G450390
TU509769 lncRNA upstream 6018 86589790 ~ 86590129 (+) True G450389
TU509767 lncRNA upstream 11159 86584736 ~ 86584988 (+) True G450387
TU509756 lncRNA upstream 20549 86569219 ~ 86575598 (+) False G450377
TU509779 lncRNA downstream 4537 86601052 ~ 86601506 (+) True G450398
TU509780 lncRNA downstream 5213 86601728 ~ 86602040 (+) True G450399
TU509798 lncRNA downstream 37082 86633597 ~ 86634739 (+) True G450415
TU509799 lncRNA downstream 38400 86634915 ~ 86635701 (+) True G450416
TU509800 lncRNA downstream 39242 86635757 ~ 86636013 (+) True G450417
XR_005051884.1 mRNA upstream 227207 86364739 ~ 86368940 (+) True LOC118964680
XM_036978622.1 mRNA upstream 252763 86264428 ~ 86343384 (+) True jak1
XR_002473637.2 mRNA upstream 333995 86260102 ~ 86262152 (+) False LOC110524728
XR_005051946.1 mRNA upstream 370202 86225891 ~ 86225945 (+) True LOC118964753
XR_005051882.1 mRNA upstream 937239 85656730 ~ 85658908 (+) False LOC118964678
XM_021604623.2 mRNA downstream 497519 87094034 ~ 87103631 (+) False si:dkey-148h10.5
XR_002473639.2 mRNA downstream 497525 87094040 ~ 87107836 (+) False si:dkey-148h10.5
XM_036978633.1 mRNA downstream 497531 87094046 ~ 87099179 (+) False si:dkey-148h10.5
XM_021604626.2 mRNA downstream 497531 87094046 ~ 87103625 (+) False si:dkey-148h10.5
XM_021604622.2 mRNA downstream 497531 87094046 ~ 87103637 (+) False si:dkey-148h10.5
TU509699 other upstream 40100 86554473 ~ 86556047 (+) False G450331
TU509700 other upstream 40100 86554928 ~ 86556047 (+) False G450331
TU509709 other upstream 127210 86468538 ~ 86468937 (+) True G450333
TU509067 other upstream 1148572 85445964 ~ 85447575 (+) False G449809
TU509068 other upstream 1148572 85445964 ~ 85447575 (+) True G449809
TU510894 other downstream 247361 86843876 ~ 86844271 (+) True G451408
TU511538 other downstream 805307 87401822 ~ 87412639 (+) False dock7
TU511578 other downstream 824289 87420804 ~ 87422836 (+) True G451959
TU511628 other downstream 923709 87520224 ~ 87630763 (+) False kank4
TU511702 other downstream 1021617 87618132 ~ 87620643 (+) True G452064

Expression Profile