RNA id: TU511436


Basic Information

Item Value
RNA id TU511436
length 453
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G451869
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87275823 ~ 87276275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctaaagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtccaataataataaggcagaacagttgaaactggagcagcagcacagtcaggtggactggggacagcaaggagtcatcatgtcaggtattcctggggcatggtcctagggctcaggtcctccgagagagagaaagaaagagagaattagagagagcatatgtgggatggccagtcctcttctggctgtgccgggtggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511429 lncRNA upstream 7605 87267944 ~ 87268218 (+) True G451862
TU511375 lncRNA upstream 37946 87237624 ~ 87237877 (+) True G451853
TU511026 lncRNA upstream 168030 87094088 ~ 87107793 (+) False si:dkey-148h10.5
TU511027 lncRNA upstream 168030 87099078 ~ 87107793 (+) True si:dkey-148h10.5
TU511021 lncRNA upstream 185471 87088554 ~ 87090352 (+) True G451524
TU511465 lncRNA downstream 41735 87318010 ~ 87318237 (+) True G451897
TU511474 lncRNA downstream 61425 87337700 ~ 87337910 (+) True G451906
TU511484 lncRNA downstream 67931 87344206 ~ 87344420 (+) True G451916
TU511485 lncRNA downstream 68549 87344824 ~ 87345160 (+) True G451917
TU511505 lncRNA downstream 107438 87383713 ~ 87384191 (+) True G451937
XR_002473639.2 mRNA upstream 167987 87094040 ~ 87107836 (+) False si:dkey-148h10.5
XM_036978644.1 mRNA downstream 125495 87401770 ~ 87482935 (+) False dock7
XM_036978634.1 mRNA downstream 125496 87401771 ~ 87493654 (+) False dock7
XM_036978635.1 mRNA downstream 125496 87401771 ~ 87493654 (+) False dock7
XM_036978636.1 mRNA downstream 125496 87401771 ~ 87493654 (+) False dock7
XM_036978637.1 mRNA downstream 125496 87401771 ~ 87493654 (+) False dock7
TU510894 other upstream 431552 86843876 ~ 86844271 (+) True G451408
TU509774 other upstream 679308 86596147 ~ 86596515 (+) True G450394
TU509699 other upstream 719776 86554473 ~ 86556047 (+) False G450331
TU509700 other upstream 719776 86554928 ~ 86556047 (+) False G450331
TU509709 other upstream 806886 86468538 ~ 86468937 (+) True G450333
TU511538 other downstream 125547 87401822 ~ 87412639 (+) False dock7
TU511578 other downstream 144529 87420804 ~ 87422836 (+) True G451959
TU511628 other downstream 243949 87520224 ~ 87630763 (+) False kank4
TU511702 other downstream 341857 87618132 ~ 87620643 (+) True G452064
TU511745 other downstream 432064 87708339 ~ 87708652 (+) True G452097

Expression Profile