RNA id: TU512016


Basic Information

Item Value
RNA id TU512016
length 981
lncRNA type read_through
GC content 0.40
exon number 2
gene id G452330
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87584191 ~ 87666309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgttttcatctgattgtaaTGTAGAAGTACAGTCTCACAACAGTCAGTCCTGTTGACACAGTACAGCACACAGCTTTGTCCAATGAGAGACGAACGTGAACCACCCAACCAATGAAAAGTTACATTGCTTTTTAAAGTAGACCAATTAGCTTATATATACCATCCAGAAGAACCAATAAATTCACATATTCCAACACAATCATTGGACTATTGGCccatgcatatactgtatattgtaaaaATATAGCATTTTTAATAAATACTAAATATATTTAAGAGCAAATGTCAGACCATACCAGATATATTTTCCacaatactgtatatgtatgtacagttaGATTTCCATATAGACCTTTAACCAGTTGAGGTCAGTCTTCAGCTCCTAGGCCTGCCTTGTGATAAacaggtgagaaagagagacagcacCACTCCACCTGGTGAGTACAGCACCTCTCCTTTGGGACCTCTTCATTTTCTGATAGGATAGATAGTATATTCTCATGTCATTTCTCTGCACCAGTGCCCTATTGTTCAATATAGAGAGAAAATTGGGGTGGAAGAGAGAGGCACAATCCCCCTAAGAACAACATTTCTACTTTTCTAGCAGTGAAACCTGTATTTGTGTCCACATGGGAGAAAGAGCTGTGTAACATCACTGACTGCAGAGGACAGTAGAGAACATGTTACTAGTCTGGCAAGTAATGGAGAGATCTCTACTGTGTTGCTTCCTGTGCTAAGTGCTGTGATGTTGTTCCTTAGGAGGCCTGCTGAATGCTATCTGGATTCTGGAATGTAAAACTGACATTCTTTGTGCATTTTGTAGCGATTTTGGTTGCATACATTATTTGATTTGTAATCTATAAAGCAGGCAGTCAAAGGGAATGATACATTACAGtggaagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtctgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511926 lncRNA downstream 101569 87493136 ~ 87493960 (-) True G452248
TU511954 lncRNA downstream 127934 87466904 ~ 87467595 (-) True G452274
TU511508 lncRNA downstream 206990 87388269 ~ 87388539 (-) True G451940
TU511504 lncRNA downstream 212046 87383254 ~ 87383483 (-) True G451936
TU511503 lncRNA downstream 212431 87382886 ~ 87383098 (-) True G451935
TU512067 lncRNA upstream 25774 87692083 ~ 87692343 (-) True G452370
TU512072 lncRNA upstream 39968 87706277 ~ 87706486 (-) True G452375
TU512073 lncRNA upstream 40340 87706649 ~ 87706934 (-) True G452376
TU512076 lncRNA upstream 43319 87709628 ~ 87709898 (-) True G452379
TU512077 lncRNA upstream 45429 87711738 ~ 87712040 (-) True G452380
XM_021603308.2 mRNA downstream 75479 87505749 ~ 87520050 (-) True usp1
XM_021603307.2 mRNA downstream 75480 87505749 ~ 87520049 (-) False usp1
XM_021604639.2 mRNA downstream 171461 87419230 ~ 87424068 (-) True angptl3
XM_021604628.2 mRNA downstream 194116 87391661 ~ 87401413 (-) True atg4c
XM_021604627.2 mRNA downstream 441710 87151825 ~ 87153819 (-) True foxd3
XM_036978657.1 mRNA upstream 18904 87685213 ~ 88049103 (-) False LOC110523029
XM_036978658.1 mRNA upstream 18904 87685213 ~ 88049103 (-) False LOC110523029
XM_036978655.1 mRNA upstream 19637 87685946 ~ 88049103 (-) False LOC110523029
XM_036978656.1 mRNA upstream 19637 87685946 ~ 88049103 (-) False LOC110523029
XM_021604649.2 mRNA upstream 596266 88262575 ~ 88268140 (-) False LOC110524751
TU511933 other downstream 96393 87498366 ~ 87499136 (-) True G452255
TU511399 other downstream 352296 87241854 ~ 87243233 (-) True G451856
TU511053 other downstream 829542 86765583 ~ 86765987 (-) True ror1
TU510765 other downstream 997785 86597352 ~ 86597744 (-) True G451286
TU510750 other downstream 1045651 86548838 ~ 86549878 (-) True G451271
TU512060 other upstream 107913 87774222 ~ 87805865 (-) True LOC110523029
TU512143 other upstream 193818 87860127 ~ 87866464 (-) True G452442
TU512158 other upstream 228423 87894732 ~ 87895212 (-) True G452457
TU512205 other upstream 317651 87983960 ~ 87984633 (-) True G452504
TU512218 other upstream 339610 88005919 ~ 88006587 (-) True G452517

Expression Profile