RNA id: TU511736


Basic Information

Item Value
RNA id TU511736
length 1801
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G452088
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87679541 ~ 87681379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaaaggaGCTCTAGAATGCTATATACTGTAGAATGCTCTCAGTACAATGATTAGAGTATAgcactgacttacagttcatcaAAGCAGAAATATCCAAATTACTTCACACGGAAaaaccaagacacacacacagacacatacactatGTTCCAAGGCACCAGTTAAGCGCCAGGCAGTGCACAAATCCACAGAGATCTACAGGTatctgtcaaaataaaggaaacaccaacataatggATTTTAATAAGGTGTTGAGCCACTacgagccaccagaacagctttaatgttggtgttttgttgacGGAGGTTGAAAACGCTGtggtcaattgggttgagatctggtgactgacacacacacacacacacacactaatctccCTAaactcctttgagacccctcttttgaagtcactgagatctcttcttctagccatggtaccCAATATAATGGGTAACTGGCCATTTTTATACATgtccctaagcatgatgggatgttaattgctcaATTAACTTAAGAACCACACCTCTGTGGAAGCACCTATATTCTTTGTATCCCTTATTTacgtgtttcctttattttggcagttaccatatacagtggcttgcgaaagtattcacccccatgacatttttccttttttgttgtcttacaacctggaattaaaatagatttttgcagggtttgtattatttgatttacacaacatgcctaccactttgaagatgcaaaaatatgttttattgtgaaacaaacaggaaatacttgagcgtgcataactattcacctccCCAAAGTCAAAACTTTaatgcagcaattacagctgcaagtctcttggggtatgtatctataagcttggcacatctagccactgggatttttgcccattcttcaaggtaaaactgctccagctccttcaagttggatggatccagctggtgtacagcaatctttaagtcaaaccacagattctcaatttgattgaggtctgggctttgactaggccattccaagacatttaaatgtttccccttaaaccacttgagtgttgctttaacagtatgcttagtgacattgtcctgctggaaggtgaacctccgtcccagtctcaaatctctggaagactgaaacaggtttccttcaagaatttccctgtatttagcaccatccatcattccttcaattcccagtccctgccgatggtgttctcggggtgatgagaggtgttgggtttgtgccagacatagcattttccttgatggccaaaaagctacattttagtctcatcaccttcttccatatgtttggggagtctcccacatgcgtGTTTGCTTCTTTTTGTCTTTaggcaatggctttttttctggctacTCTTCcctaaagcccagctctgtggagtgtacggtgtcatgacgtggccctctttggctatagcgagcaccatcccccctctctctcaccacctctcccttccccctacACCCAGGCTCTGTTATCACAGGTCACAAATTCCTAGAGGAGTCTCTCTCCTCATGGCCAGGCAGTATAGAGAGAAGGTTTCACAGGAGAACAAAGGAACCTCTTCTCCATCATAGAACCTAAGAACTGAACAAtgtccatgttttggagaatgtgttcACGGTCGCGGGAGAATCCAGCTTCGACCGGTCCATTTTGTTTAAtgtttgtgaaactcatgagagacaatacagcaacattaccataactctgtttatacaagagtctcagttgtggggcttgcatctaattgttgtataaaatgaatgagtaaagatgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511624 lncRNA upstream 13144 87592699 ~ 87666397 (+) False kank4
TU511623 lncRNA upstream 13144 87662960 ~ 87666397 (+) True kank4
TU511622 lncRNA upstream 14292 87592699 ~ 87665249 (+) False kank4
TU511621 lncRNA upstream 14292 87662960 ~ 87665249 (+) False kank4
TU511721 lncRNA upstream 20488 87657856 ~ 87659053 (+) True G452078
TU511737 lncRNA downstream 1687 87683066 ~ 87684138 (+) True G452089
TU511740 lncRNA downstream 11014 87692393 ~ 87692623 (+) True G452092
TU511743 lncRNA downstream 24973 87706352 ~ 87706601 (+) True G452095
TU511746 lncRNA downstream 29222 87710601 ~ 87710901 (+) True G452098
TU511753 lncRNA downstream 58641 87740020 ~ 87740229 (+) True G452105
XM_036978652.1 mRNA upstream 13137 87521705 ~ 87666404 (+) False kank4
XM_036978653.1 mRNA upstream 13137 87521705 ~ 87666404 (+) False kank4
XM_036978654.1 mRNA upstream 13137 87521708 ~ 87666404 (+) False kank4
XM_036978647.1 mRNA upstream 185887 87401771 ~ 87493654 (+) False dock7
XM_021604647.2 mRNA downstream 490380 88171759 ~ 88177340 (+) True dmrt2b
XM_021604651.2 mRNA downstream 580057 88261436 ~ 88263514 (+) True fam183a
XM_036979078.1 mRNA downstream 586815 88268194 ~ 88289087 (+) True LOC110523030
XM_036978659.1 mRNA downstream 606045 88287424 ~ 88297156 (+) False LOC110524752
XR_005051886.1 mRNA downstream 660229 88341608 ~ 88342555 (+) True LOC118964681
TU511628 other upstream 48778 87520224 ~ 87630763 (+) False kank4
TU511702 other upstream 58898 87618132 ~ 87620643 (+) True G452064
TU511578 other upstream 256705 87420804 ~ 87422836 (+) True G451959
TU511538 other upstream 266902 87401822 ~ 87412639 (+) False dock7
TU510894 other upstream 835270 86843876 ~ 86844271 (+) True G451408
TU511745 other downstream 26960 87708339 ~ 87708652 (+) True G452097
TU511749 other downstream 40867 87722246 ~ 87722792 (+) True G452101
TU511759 other downstream 89225 87770604 ~ 87772094 (+) True G452111
TU511831 other downstream 220936 87902315 ~ 87903440 (+) True G452159
TU512316 other downstream 439020 88120399 ~ 88125867 (+) True G452609

Expression Profile