RNA id: TU512084


Basic Information

Item Value
RNA id TU512084
length 274
lncRNA type intronic
GC content 0.50
exon number 1
gene id G452387
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87743464 ~ 87743737 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGACTGATATCGGGGCTGACTGATTAGATGGAGTGTAAATGAGGGCTGAGCAGACAGTTAGACAGGGTAGGGTGACAGACTGACAGGTGTTGTACAGGGATAGATTGGAGATCATGTACGGCAGATGAGTGCAATACCTCTTCCCTAATCTGCTATTGTGGGCGTGTGAATGCACTCCTGGTCTAGATGGCTTATCTGAAAGAACCCGCAACCCTCCAGGCTTAGACTTCACTGTCATCTAGCTGACACCCTGCACAATGGATATCAGCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512083 lncRNA downstream 993 87742271 ~ 87742471 (-) True G452386
TU512079 lncRNA downstream 12372 87730473 ~ 87731092 (-) True G452382
TU512078 lncRNA downstream 20639 87722617 ~ 87722825 (-) True G452381
TU512077 lncRNA downstream 31424 87711738 ~ 87712040 (-) True G452380
TU512076 lncRNA downstream 33566 87709628 ~ 87709898 (-) True G452379
TU512090 lncRNA upstream 10103 87753840 ~ 87754060 (-) True G452390
TU512091 lncRNA upstream 17745 87761482 ~ 87761783 (-) True G452391
TU512140 lncRNA upstream 115023 87858760 ~ 87858987 (-) True G452440
TU512142 lncRNA upstream 116390 87860127 ~ 87866464 (-) False G452442
TU512148 lncRNA upstream 132349 87876086 ~ 87876317 (-) True G452447
XR_005051885.1 mRNA downstream 83944 87657929 ~ 87659520 (-) True LOC110522895
XM_021603308.2 mRNA downstream 223414 87505749 ~ 87520050 (-) True usp1
XM_021603307.2 mRNA downstream 223415 87505749 ~ 87520049 (-) False usp1
XM_021604639.2 mRNA downstream 319396 87419230 ~ 87424068 (-) True angptl3
XM_021604628.2 mRNA downstream 342051 87391661 ~ 87401413 (-) True atg4c
XM_021604649.2 mRNA upstream 518838 88262575 ~ 88268140 (-) False LOC110524751
XR_002473645.2 mRNA upstream 518838 88262575 ~ 88268140 (-) True LOC110524751
XM_036978661.1 mRNA upstream 562191 88305928 ~ 88345287 (-) False ap1m3
XM_036978660.1 mRNA upstream 562191 88305928 ~ 88348088 (-) True ap1m3
XM_036978662.1 mRNA upstream 604596 88348333 ~ 88355068 (-) True c5h1orf210
TU511933 other downstream 244328 87498366 ~ 87499136 (-) True G452255
TU511399 other downstream 500231 87241854 ~ 87243233 (-) True G451856
TU511053 other downstream 977477 86765583 ~ 86765987 (-) True ror1
TU510765 other downstream 1145720 86597352 ~ 86597744 (-) True G451286
TU510750 other downstream 1193586 86548838 ~ 86549878 (-) True G451271
TU512060 other upstream 30485 87774222 ~ 87805865 (-) True LOC110523029
TU512143 other upstream 116390 87860127 ~ 87866464 (-) True G452442
TU512158 other upstream 150995 87894732 ~ 87895212 (-) True G452457
TU512205 other upstream 240223 87983960 ~ 87984633 (-) True G452504
TU512218 other upstream 262182 88005919 ~ 88006587 (-) True G452517

Expression Profile