RNA id: TU512871


Basic Information

Item Value
RNA id TU512871
length 299
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G453040
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88634284 ~ 88634582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctgtaccccacacatacaattatctgtaaggtccctctgtcaagcagtgaatttcaaccacagattcaaccacaaagaccagggaggttttccgatGCCTCGTAAAGAAGGGAACCTATTTGTAGATGGCTAAAGAAAAAGCAGaccatttgagcatggtaaagttattaattacattttggatgtgtatcaatacacccagtcactacaaagatacaggcgtccttcttaactcagtagccggagaggaaggaaaccgctcagggatttcaccatgaggccaatggtgactttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512831 lncRNA downstream 35880 88598150 ~ 88598404 (-) True G453000
TU512813 lncRNA downstream 56459 88577545 ~ 88577825 (-) True G452982
TU512810 lncRNA downstream 62744 88571293 ~ 88571540 (-) True G452979
TU512680 lncRNA downstream 231263 88401973 ~ 88403021 (-) True orc1
TU512650 lncRNA downstream 305011 88328321 ~ 88329273 (-) True G452885
TU513459 lncRNA upstream 28891 88663473 ~ 88663756 (-) True G453561
TU513460 lncRNA upstream 31407 88665989 ~ 88674630 (-) True G453562
TU513488 lncRNA upstream 75370 88709952 ~ 88710299 (-) True G453588
TU513489 lncRNA upstream 76062 88710644 ~ 88710887 (-) True G453589
TU513493 lncRNA upstream 83828 88718410 ~ 88718649 (-) True G453593
XM_036978692.1 mRNA downstream 164703 88440502 ~ 88469581 (-) False LOC110522897
XM_036978693.1 mRNA downstream 164703 88440502 ~ 88469581 (-) True LOC110522897
XM_021604663.2 mRNA downstream 215109 88417417 ~ 88419175 (-) True LOC110524758
XM_021604664.2 mRNA downstream 215150 88417417 ~ 88419134 (-) False LOC110524758
XM_036978685.1 mRNA downstream 221488 88401930 ~ 88412796 (-) False orc1
XM_036978705.1 mRNA upstream 517150 89151732 ~ 89253943 (-) False mast2
XM_036978704.1 mRNA upstream 517150 89151732 ~ 89262052 (-) False mast2
XM_036978707.1 mRNA upstream 517150 89151732 ~ 89262052 (-) False mast2
XM_036978706.1 mRNA upstream 517150 89151732 ~ 89315514 (-) False mast2
XM_036978701.1 mRNA upstream 517150 89151732 ~ 89465995 (-) False mast2
TU512830 other downstream 37889 88595451 ~ 88596395 (-) True G452999
TU512280 other downstream 559279 88074594 ~ 88075005 (-) True G452575
TU512218 other downstream 627697 88005919 ~ 88006587 (-) True G452517
TU512205 other downstream 649651 87983960 ~ 87984633 (-) True G452504
TU512158 other downstream 739072 87894732 ~ 87895212 (-) True G452457
TU513651 other upstream 517158 89151740 ~ 89154263 (-) False mast2
TU513653 other upstream 517158 89151740 ~ 89154263 (-) False mast2
TU513654 other upstream 517158 89151740 ~ 89154263 (-) False mast2
TU513655 other upstream 517158 89151740 ~ 89154263 (-) False mast2
TU513656 other upstream 517158 89151740 ~ 89154263 (-) False mast2

Expression Profile