RNA id: TU513488


Basic Information

Item Value
RNA id TU513488
length 348
lncRNA type intronic
GC content 0.39
exon number 1
gene id G453588
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88709952 ~ 88710299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgataccatcgatcaccacattcttttggagagattggaaacccaaattggtcaacacggacaagttctggcctggtttagatcttatctgtcggaaagatatcagtttgtctctgtgaatggtttatcctctgacaaatcaactgtaaatttcggtgttcctcaaggttccgttttaggaccactattgttttcactatatattttacctcttggggatgttattcgaaaacataatgttaactttcactgctatgcggatgacacacagctgtacatttcaatgaagcatggtgaagccccaaaattgcccttgctagaagaatgtgtttcagacataaggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513460 lncRNA downstream 35322 88665989 ~ 88674630 (-) True G453562
TU513459 lncRNA downstream 46196 88663473 ~ 88663756 (-) True G453561
TU512871 lncRNA downstream 75370 88634284 ~ 88634582 (-) True G453040
TU512831 lncRNA downstream 111548 88598150 ~ 88598404 (-) True G453000
TU512813 lncRNA downstream 132127 88577545 ~ 88577825 (-) True G452982
TU513489 lncRNA upstream 345 88710644 ~ 88710887 (-) True G453589
TU513493 lncRNA upstream 8111 88718410 ~ 88718649 (-) True G453593
TU513494 lncRNA upstream 8470 88718769 ~ 88719012 (-) True G453594
TU513499 lncRNA upstream 14259 88724558 ~ 88724939 (-) True G453598
TU513555 lncRNA upstream 122170 88832469 ~ 88832830 (-) True G453651
XM_036978692.1 mRNA downstream 240371 88440502 ~ 88469581 (-) False LOC110522897
XM_036978693.1 mRNA downstream 240371 88440502 ~ 88469581 (-) True LOC110522897
XM_021604663.2 mRNA downstream 290777 88417417 ~ 88419175 (-) True LOC110524758
XM_021604664.2 mRNA downstream 290818 88417417 ~ 88419134 (-) False LOC110524758
XM_036978685.1 mRNA downstream 297156 88401930 ~ 88412796 (-) False orc1
XM_036978705.1 mRNA upstream 441433 89151732 ~ 89253943 (-) False mast2
XM_036978704.1 mRNA upstream 441433 89151732 ~ 89262052 (-) False mast2
XM_036978707.1 mRNA upstream 441433 89151732 ~ 89262052 (-) False mast2
XM_036978706.1 mRNA upstream 441433 89151732 ~ 89315514 (-) False mast2
XM_036978701.1 mRNA upstream 441433 89151732 ~ 89465995 (-) False mast2
TU512830 other downstream 113557 88595451 ~ 88596395 (-) True G452999
TU512280 other downstream 634947 88074594 ~ 88075005 (-) True G452575
TU512218 other downstream 703365 88005919 ~ 88006587 (-) True G452517
TU512205 other downstream 725319 87983960 ~ 87984633 (-) True G452504
TU512158 other downstream 814740 87894732 ~ 87895212 (-) True G452457
TU513651 other upstream 441441 89151740 ~ 89154263 (-) False mast2
TU513653 other upstream 441441 89151740 ~ 89154263 (-) False mast2
TU513654 other upstream 441441 89151740 ~ 89154263 (-) False mast2
TU513655 other upstream 441441 89151740 ~ 89154263 (-) False mast2
TU513656 other upstream 441441 89151740 ~ 89154263 (-) False mast2

Expression Profile