RNA id: TU513555


Basic Information

Item Value
RNA id TU513555
length 362
lncRNA type intronic
GC content 0.49
exon number 1
gene id G453651
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88832469 ~ 88832830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgggctaaattataggtgggctatgtacaggtgcagtaatatgtgagctgctctgacagctggtgcttaaagctagtgagggagataagtgtttccagtttcagagatttttgtagtttgttccagtcattggcagcagagaactggaaggagaggcggccaaagaaataattggttttgggggtgaccagagagatatacctgctggagctggtgctacaggtgggtgatgctatggtgaccagtgagctgagataaggggggactttacctagcagggtcttgtagatgacatggaaccagtgggtttggcgatgagaatgaagcgagggccagccaacgagagcgtacaggtcgcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513499 lncRNA downstream 107530 88724558 ~ 88724939 (-) True G453598
TU513494 lncRNA downstream 113457 88718769 ~ 88719012 (-) True G453594
TU513493 lncRNA downstream 113820 88718410 ~ 88718649 (-) True G453593
TU513489 lncRNA downstream 121582 88710644 ~ 88710887 (-) True G453589
TU513488 lncRNA downstream 122170 88709952 ~ 88710299 (-) True G453588
TU513556 lncRNA upstream 54 88832884 ~ 88833251 (-) True G453652
TU513567 lncRNA upstream 14063 88846893 ~ 88896024 (-) True G453660
TU513627 lncRNA upstream 135867 88968697 ~ 88968977 (-) True G453718
TU513633 lncRNA upstream 169366 89002196 ~ 89002406 (-) True G453724
TU513636 lncRNA upstream 178390 89011220 ~ 89011902 (-) True G453727
XM_036978692.1 mRNA downstream 362888 88440502 ~ 88469581 (-) False LOC110522897
XM_036978693.1 mRNA downstream 362888 88440502 ~ 88469581 (-) True LOC110522897
XM_021604663.2 mRNA downstream 413294 88417417 ~ 88419175 (-) True LOC110524758
XM_021604664.2 mRNA downstream 413335 88417417 ~ 88419134 (-) False LOC110524758
XM_036978685.1 mRNA downstream 419673 88401930 ~ 88412796 (-) False orc1
XM_036978705.1 mRNA upstream 318902 89151732 ~ 89253943 (-) False mast2
XM_036978704.1 mRNA upstream 318902 89151732 ~ 89262052 (-) False mast2
XM_036978707.1 mRNA upstream 318902 89151732 ~ 89262052 (-) False mast2
XM_036978706.1 mRNA upstream 318902 89151732 ~ 89315514 (-) False mast2
XM_036978701.1 mRNA upstream 318902 89151732 ~ 89465995 (-) False mast2
TU512830 other downstream 236074 88595451 ~ 88596395 (-) True G452999
TU512280 other downstream 757464 88074594 ~ 88075005 (-) True G452575
TU512218 other downstream 825882 88005919 ~ 88006587 (-) True G452517
TU512205 other downstream 847836 87983960 ~ 87984633 (-) True G452504
TU512158 other downstream 937257 87894732 ~ 87895212 (-) True G452457
TU513651 other upstream 318910 89151740 ~ 89154263 (-) False mast2
TU513653 other upstream 318910 89151740 ~ 89154263 (-) False mast2
TU513654 other upstream 318910 89151740 ~ 89154263 (-) False mast2
TU513655 other upstream 318910 89151740 ~ 89154263 (-) False mast2
TU513656 other upstream 318910 89151740 ~ 89154263 (-) False mast2

Expression Profile