RNA id: TU513641


Basic Information

Item Value
RNA id TU513641
length 548
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G453732
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89037223 ~ 89037770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacctacactccctggctgtaagtgtataaacctacagtacactccctggctgtaagtgcataaacctacactccctggctgtaagtgtataaacctacagtacactccctggttgtaagtgtataaacctacagtacacgtcctggttgtaagtgtataaacctacagtacaccccctggttgtaagtgtataaacctacactccctggctgtaagtgtataaacctacagtacactccctggctgtaagtgtataaaactacagtacactccctggttgtaagtgtataaacctacagtacaccccctggctgtaagtgtataaacctacagtacactccctggttgtaagtgtataaacctacagtacactccctggctgtaagtgtataaacctacagtgcactccctggttgtaagtgtataaacctacagtacactccctggttgtaagtgtataaacctacagtacaccccctggttgtaagtgtataaacctacactccctggctgtaagtgtataaacctacagtacactccctggctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513637 lncRNA downstream 20323 89016671 ~ 89016900 (-) True G453728
TU513636 lncRNA downstream 25321 89011220 ~ 89011902 (-) True G453727
TU513633 lncRNA downstream 34817 89002196 ~ 89002406 (-) True G453724
TU513627 lncRNA downstream 68246 88968697 ~ 88968977 (-) True G453718
TU513567 lncRNA downstream 141199 88846893 ~ 88896024 (-) True G453660
TU513678 lncRNA upstream 103211 89140981 ~ 89155299 (-) False mast2
TU513740 lncRNA upstream 149030 89186800 ~ 89189317 (-) False G453802
TU513741 lncRNA upstream 149288 89187058 ~ 89189317 (-) True G453802
TU513776 lncRNA upstream 191929 89229699 ~ 89236608 (-) False G453823
TU513773 lncRNA upstream 193455 89231225 ~ 89234023 (-) False G453823
XM_036978692.1 mRNA downstream 567642 88440502 ~ 88469581 (-) False LOC110522897
XM_036978693.1 mRNA downstream 567642 88440502 ~ 88469581 (-) True LOC110522897
XM_021604663.2 mRNA downstream 618048 88417417 ~ 88419175 (-) True LOC110524758
XM_021604664.2 mRNA downstream 618089 88417417 ~ 88419134 (-) False LOC110524758
XM_036978685.1 mRNA downstream 624427 88401930 ~ 88412796 (-) False orc1
XM_036978705.1 mRNA upstream 113962 89151732 ~ 89253943 (-) False mast2
XM_036978704.1 mRNA upstream 113962 89151732 ~ 89262052 (-) False mast2
XM_036978707.1 mRNA upstream 113962 89151732 ~ 89262052 (-) False mast2
XM_036978706.1 mRNA upstream 113962 89151732 ~ 89315514 (-) False mast2
XM_036978701.1 mRNA upstream 113962 89151732 ~ 89465995 (-) False mast2
TU512830 other downstream 440828 88595451 ~ 88596395 (-) True G452999
TU512280 other downstream 962218 88074594 ~ 88075005 (-) True G452575
TU512218 other downstream 1030636 88005919 ~ 88006587 (-) True G452517
TU512205 other downstream 1052590 87983960 ~ 87984633 (-) True G452504
TU512158 other downstream 1142011 87894732 ~ 87895212 (-) True G452457
TU513651 other upstream 113970 89151740 ~ 89154263 (-) False mast2
TU513653 other upstream 113970 89151740 ~ 89154263 (-) False mast2
TU513654 other upstream 113970 89151740 ~ 89154263 (-) False mast2
TU513655 other upstream 113970 89151740 ~ 89154263 (-) False mast2
TU513656 other upstream 113970 89151740 ~ 89154263 (-) False mast2

Expression Profile