RNA id: TU513158


Basic Information

Item Value
RNA id TU513158
length 3470
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G453294
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89151748 ~ 89155291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTATTATGATAATGTAGGATTAACAACAACATGCGTTTaaccacaataaaaaataaaaagatattGCACTGGTTTTACTGTAGCAATCTCTCTTCACCCTTTTCAGACAGACCTCCTCTCCTTCACACTTCAGACAcacgctgtacacacacacacacacaggatctctctcacacagtctttAAAATACTGCCTAAACACTGGGGAGTCCATAATATGAAGTCAACAGTCTCCTCTTCCCTCAGTTCAGTGGCATTGGTCTCTGCACACAGACAGCCCTACCATCGCTATGGGCTTTAACACACAACGCATACTGTGGCTACAAtaaaaacacatactgtatggatCTGTCTGTAGAGATGTAGTGAGGCTAAAGTCCAGGGTGGAGGTTACCCACAGGgttaacaaagagagagagagagagggacagcccCTACAGTGGGGAGCTACCGTGGCTTTGGGCTCTGGTGGGCCTAACTGAACATTGGAGGTGATGGGCCCAGACTAGGGGGTAGGTAGTGTTTTGTTTGGCTGAAATTGctttgtttgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgggagcaGCCAACAGCCCAGGGCTAAAGATGAATTACTCCACCAGGGAAACTAACACTTGACTTCACTCTCTGACAGATGGCTGGATCAGCAACATTACAGACGATGTTTGTGTGATACAACAGTGAATGTCAGGGATGGTCAGGCGCCTGGCGGTGAAGGATGGCACTCGGATTGGGTCAGAGAGAGTAGCAGCTGTCCAAGCAGCAATAACAACAGGGCCACCAGTATAGTCCAGATGAGATGacatacaacacaatacacactgTAGAAACTATTCTTATAGGGATGACCCATATCAAATCAGAACTTCAGATCAGTTTTGGGACTATAGTCATTCGATGTGCAGGGGCCAAGTGAACAACATTAATTTACTATCAAATGGGGAATGCCACAGAGACTTGTCTTCAAATCATGACTCTAGCTGATATAAAATAACCCTCAACACACAGAAACAAATGAAGGATGACAATTTGAGTCACCTGACATATTCGGCCAACGAGGAGATGCTCTCTCAGTCTGGGGTTGATTGATTGGCTACAGCAGAGTTGTTAAATCCCAACGCTAAGCTTGGCCGATCTGTCCCAGTGACAAATGACAGCTTTTCTCTGGGAGGACTTAGGGCCTACACCTCACATTACCTACCCTCTATCCTTCTGCACTAGAGGATACCACTATTCACACCGCAGGTCCCCCCcgtttcctatatagtgcactacttttgaccatggccgaACCTCTAAACATTATATGCACAATGTTCCTCCTCATGAACATTGTCTGTGGTCcgtcagtggttaggttacatgAATAATAGGTAGAGGCCATAACAAACCAGTCACACTGATATGATCCAGGGTAACTTTACAGTGTGGAAAGCTGTTGACATGAATAATTATCACTGCCTGTTACAGAGGTTGATGTCTAGTAGCATTGAGGAAGATTGAACAACATTGAAACACATTACAGAAATCGCTAGCCACggacggtctgtctgtctgtctgtcgttagGTATTGACAACACAGATCTCTTTAGTATCTATAGACACCAGTCCTGTCTCACCCTCAGTCAGTCATCCCATTGAGCTGCTCTTTGCGACATCTCCAACAGCAACAAAACTTTGCAGGACACCCCGAGGGAAATTTGAACTCTCACACAGAAACAAAGTGATGTATGCTGCAGGTAGCCACAGTTTTACAACACGGCAACATCCCCTTACTTTGCAAACTAAGACACACAAATgaacgcccacacacacacgcaggaacacacacgcaggaacacacacacaggaacacacacacgcaggaacacacacacgcaggaacacacacacgcaggaacacacacacgcaggaacacacacacgcagggacacacacacaggaatacacaCAAGTATGAACGCCCACACCCACGAACACCCACAAACCCCCACACGTAGCAGTGGGACTGGAGGATCATAGTGGTGTTCGGTCAGTTCAGACTTCTGATTGGTCAACATCGTTGTGACTGACCTAAAAGCCAGGGATCTGATTGGTCAACATCGTTGTGACTGACCTAAAAGCCAGGGATCTGATTGGTCAACATCGTTGTGACTGACCTAAAAGCCAGGGATCTGATTGCCCTTCCTTTTATTTAGTTGTCTTTTCATTTGACAGACAGCGATAAAAGGGTTGTGCAAAGCCCGCCCCCCTGCTGACCCATCCCCGACCCTACAGGCCAACTGAGATATCAGTCAGGGACAGACAGCACTAATAGGGGTAACTAACTACGAGACGTCTACACTAACTAAAACACACTCCCAAGTCCCAACACGGTAGAGTAAAAAAGACACTGCAAACCTttaaatattaatatatatatatatatgtatgaatATTTCAAGgtctgctatatatatatatatatatacacacaaacacacacacatctgacagCCACTTgacaacacacacagtcttgaACGCATATACAAAGTAAAGTCTGTTAGCTTTACAGGATAAGAGGCAAAACACAGAGCGAACACAGCAAGTTGAACAAACCTTAAGTGTCTGATAAAAACAGAGCGAGCAGGGGCTAGAAATAAAGACAACGGTGAGACCACTGGTTGTCAGAATATACATGAAGGCCAGTGTGTCTACTGTTGTACTGCTACACTACGTAGAGCTTGGACACATCTCCCCGAAAAATCTGATCTGGACTTTTTCAAATTTATGGCCATTCACAATATATAcctcaatttatttatttattttttactctaagctttttttttgtacaattaaaggtaaaataaactgcatttcaaacagtcagctATAATCGAATGAATTCAGGACTTGTGAAattatacctaggctaaataaaagccttccacaaccataagacccatTAATAAttgtatacttttttttaatcaaaatagtTTAAGCTGATTTTTTTTCTGGCTTTCAAGTCTATGAAAATGCCCTTTTCTGTTCCAAATGTAACCAGAACCATGTATAATgtacattcactaataatgaccaaCTTCTTGTAGTAGGCAATATAGAACATTAACACAGGTCTCATATAAGCAATCTCTCAAGCAATGTTCATTATACTCTGGTTTTAGTAGCGTCTGCTCTATGCGTAATTTGAGAAGTTGAGACATAAAGAGGGTTAACTTCTCTACAACAGTAAattaatgtctcaatgtgtttcagtgtcCATATGACCCATTCTGTtagaccaaacctcaaatgcGAGTTGAAACTGCTTGTCAGAGAGGACGTGATCTTTagtctttgttgttgtgagtgacagggggaggggcttggtgtctgtgtgcaAGTGGGAAGGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513112 lncRNA upstream 93241 89046260 ~ 89058507 (+) True G453249
TU513113 lncRNA upstream 94006 89053856 ~ 89057742 (+) True G453250
TU513111 lncRNA upstream 116977 89031794 ~ 89034771 (+) True G453248
TU513109 lncRNA upstream 119473 89026780 ~ 89032275 (+) False G453247
TU513110 lncRNA upstream 122370 89026780 ~ 89029378 (+) True G453247
TU513211 lncRNA downstream 71280 89226571 ~ 89227523 (+) True G453345
TU513220 lncRNA downstream 73750 89229041 ~ 89233853 (+) False G453348
TU513222 lncRNA downstream 73871 89229162 ~ 89233853 (+) False G453348
TU513224 lncRNA downstream 73871 89229162 ~ 89233853 (+) False G453348
TU513221 lncRNA downstream 74103 89229394 ~ 89233853 (+) False G453348
XM_036978694.1 mRNA upstream 171859 88655985 ~ 88979889 (+) False LOC110524761
XM_036978695.1 mRNA upstream 171859 88655985 ~ 88979889 (+) False LOC110524761
XM_036978696.1 mRNA upstream 171859 88942400 ~ 88979889 (+) True LOC110524761
XM_021601346.2 mRNA upstream 580563 88570295 ~ 88571185 (+) True LOC110522898
LOC110522896 mRNA upstream 719095 88425966 ~ 88432653 (+) True LOC110522896
XM_036978726.1 mRNA downstream 493018 89648309 ~ 89669213 (+) True LOC118964683
XM_036978727.1 mRNA downstream 565147 89720438 ~ 89762349 (+) False kifap3a
XM_036978729.1 mRNA downstream 565147 89720438 ~ 89762349 (+) False kifap3a
XR_005051888.1 mRNA downstream 565147 89720438 ~ 89762349 (+) False kifap3a
XR_002473648.2 mRNA downstream 657735 89813026 ~ 89846992 (+) False swt1
TU512417 other upstream 847299 88303307 ~ 88304449 (+) True G452697
TU512390 other upstream 928121 88223282 ~ 88223627 (+) True G452673
TU512316 other upstream 1025881 88120399 ~ 88125867 (+) True G452609
TU511831 other upstream 1248308 87902315 ~ 87903440 (+) True G452159
TU511759 other upstream 1379654 87770604 ~ 87772094 (+) True G452111
TU513314 other downstream 229934 89385225 ~ 89386470 (+) True G453429
TU513445 other downstream 444673 89599964 ~ 89600696 (+) True G453547
TU514832 other downstream 1291404 90446695 ~ 90447956 (+) True G454751
TU515294 other downstream 1633227 90788518 ~ 90790211 (+) True G455168
TU515337 other downstream 1838574 90993865 ~ 90994299 (+) True G455203

Expression Profile