RNA id: TU513218


Basic Information

Item Value
RNA id TU513218
length 1581
lncRNA type intronic
GC content 0.44
exon number 9
gene id G453347
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89235757 ~ 89238160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagtaggatggagagacggagagagggtatagtcggatggagagacagagagagggtatagtaggatggagagatggagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacggagaggtacagtttaagaagagaaggagaagtgaAAGAGtgtgaagggaggacagagaaatGGGAGGGACTAGAGAAACACTCACTCCACCACTCTTCATTTTACGTAGTGTATTTAACAACATCCTGTttagagagagaaaagcaggacTAAATCAAGTCAACAACAACTAGCCCCAGTAAGGCCTTGGTACATTGACAGGGTAATGGCTAGATGGGTGCATTGACAGGGTAATGGTTAGATGGGTGCATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTCATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGACGGGTACATTGACCGGGTAATGCTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTGCATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGACGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGACGGGTACATTGACAGGGTAATGGTTAGACGGGTACATTGACAGGGTAATGGTTAGATGGCAGATTtgtggaggcaggcaggcaggagcgTGAAATTAACGTTGTTCTGCAATCATCCAGATAGGAGCTGCTTCTCCTCTCACCATGTGTAAGGGTGTTTCTACATgtagtcctctttaaagtgaactggggtaaaagaaaagagaaaagaagCAAAAGAGCTCTGTTGTCGTTGTCTTCACACTGCTCTTGCCTTGGAATAAGGACTCGACTCTTTTTCCAGTTTAATTCACCTATTTTGTGGTCTGAGTTCTTCACATTCACAATGCTGTGTTTAGAAAGGAACCCAGATCTTTTTCCAGTTTAATTCACCTATTTTGTGGTCTGAGTCTGAAAACACCATAATATCATGACATATTGGTTCACTTCTCTCAGTCCGAACCAGTTATATTAAGGTTTTCTGAGGGTTTAAAAGTGTGAAAACACCATAATATCATGACATATTGGTTCACTTCTCTCAGTCCGAACCAGTTATATTAAGGTTTTCTGAGGGTTTAAAAGCTCATGTCTCAGCTCAAACCAATAACTTCACTAACATGCACACACCCGAGCCAGCTCCCAGAGGTTAGAAGTATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513220 lncRNA upstream 1904 89229041 ~ 89233853 (+) False G453348
TU513222 lncRNA upstream 1904 89229162 ~ 89233853 (+) False G453348
TU513224 lncRNA upstream 1904 89229162 ~ 89233853 (+) False G453348
TU513221 lncRNA upstream 1904 89229394 ~ 89233853 (+) False G453348
TU513219 lncRNA upstream 1904 89230490 ~ 89233853 (+) True G453348
TU513253 lncRNA downstream 35055 89273215 ~ 89273643 (+) True G453377
TU513273 lncRNA downstream 77515 89315675 ~ 89318730 (+) False G453396
TU513274 lncRNA downstream 77515 89315675 ~ 89319363 (+) True G453396
TU513291 lncRNA downstream 100936 89339096 ~ 89340551 (+) True G453413
TU513298 lncRNA downstream 107765 89345925 ~ 89351633 (+) True G453417
XM_036978694.1 mRNA upstream 255868 88655985 ~ 88979889 (+) False LOC110524761
XM_036978695.1 mRNA upstream 255868 88655985 ~ 88979889 (+) False LOC110524761
XM_036978696.1 mRNA upstream 255868 88942400 ~ 88979889 (+) True LOC110524761
XM_021601346.2 mRNA upstream 664572 88570295 ~ 88571185 (+) True LOC110522898
LOC110522896 mRNA upstream 803104 88425966 ~ 88432653 (+) True LOC110522896
XM_036978726.1 mRNA downstream 410149 89648309 ~ 89669213 (+) True LOC118964683
XM_036978727.1 mRNA downstream 482278 89720438 ~ 89762349 (+) False kifap3a
XM_036978729.1 mRNA downstream 482278 89720438 ~ 89762349 (+) False kifap3a
XR_005051888.1 mRNA downstream 482278 89720438 ~ 89762349 (+) False kifap3a
XR_002473648.2 mRNA downstream 574866 89813026 ~ 89846992 (+) False swt1
TU512417 other upstream 931308 88303307 ~ 88304449 (+) True G452697
TU512390 other upstream 1012130 88223282 ~ 88223627 (+) True G452673
TU512316 other upstream 1109890 88120399 ~ 88125867 (+) True G452609
TU511831 other upstream 1332317 87902315 ~ 87903440 (+) True G452159
TU511759 other upstream 1463663 87770604 ~ 87772094 (+) True G452111
TU513314 other downstream 147065 89385225 ~ 89386470 (+) True G453429
TU513445 other downstream 361804 89599964 ~ 89600696 (+) True G453547
TU514832 other downstream 1208535 90446695 ~ 90447956 (+) True G454751
TU515294 other downstream 1550358 90788518 ~ 90790211 (+) True G455168
TU515337 other downstream 1755705 90993865 ~ 90994299 (+) True G455203

Expression Profile