RNA id: TU513291


Basic Information

Item Value
RNA id TU513291
length 1418
lncRNA type intronic
GC content 0.37
exon number 2
gene id G453413
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89339096 ~ 89340551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGAGTATAGATTAAATCTGGGTTACATCTATTTGTTTCCTGAACATGAATTTGATTGCAAATTTATGTTGAAAGAGTTggtttgctaacatttctaaaaacacgtttttacttattatgtggtattgtgtgggtgagatatttttatttaatccattttttattaattttgtaacaacaaaatttgtaataagtcaaggggtatgaatacttcctgaaggcactgtgtacagctgaagtcagaagtttacatacaccttagccaaatacatttaaacttagtatttcacaattcctgacatttaatccttgtaaaaattccatgtcttaggtcagtttggatcaccactttattttaagaatgtgaaatgtccgaataatagtaaagagaatgattgatttcagcttttatttatttcatcacattctcagtgggtcagaagttcacatacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaacgtttcgggtagtcttccacaagcttcccacgggtgaattttggcccattccttctgacagaaatgctgtaactgagtcaggtttgtaggcctccttgctcgcacgcgccttttcagttctgcccacacattttctatgggattgaggtcagggctttgtgatggccactccaataccttgacttcgctGTCCttataagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgaatgtcttgagatgttgcttcaatatatccacataattttcctccctcatgacgctatctattttgtgaagtgcaccagtccctcctgcagcaaagcacccccacaacatgatgcttgcaagcctccccctttttcctccaaacataacgatggtcattatggccaaacagttttatttttgtttcatcagacaagaggacatttctccaaaaagtatgatctttgtccccatgtgcagtttttttttctcaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaatttatgtcaattatcctatcagaagcttctaaagccataacataatttctggaactttccaagctgtttaaaagcacagtcaattacttgcgtcatgcaactttccaaaactatagtttgttaacaataatttTTTGGGGTGTTTGAAAAACtaggtttaatgactccaacctaagtgtatgtaaacttccggcttcaactgGATATTAGAACATTTTTAAGAGCCTAAACATTACGAAACTTATATTCGATTAAATAAGCCTCATGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513274 lncRNA upstream 19733 89315675 ~ 89319363 (+) True G453396
TU513273 lncRNA upstream 20366 89315675 ~ 89318730 (+) False G453396
TU513253 lncRNA upstream 65453 89273215 ~ 89273643 (+) True G453377
TU513218 lncRNA upstream 100936 89235757 ~ 89238160 (+) True G453347
TU513224 lncRNA upstream 105243 89229162 ~ 89233853 (+) False G453348
TU513298 lncRNA downstream 5374 89345925 ~ 89351633 (+) True G453417
TU513310 lncRNA downstream 32417 89372968 ~ 89374271 (+) False G453428
TU513311 lncRNA downstream 32417 89372968 ~ 89374271 (+) False G453428
TU513309 lncRNA downstream 33168 89373719 ~ 89374271 (+) False G453428
TU513313 lncRNA downstream 33168 89373719 ~ 89374271 (+) True G453428
XM_036978694.1 mRNA upstream 359207 88655985 ~ 88979889 (+) False LOC110524761
XM_036978695.1 mRNA upstream 359207 88655985 ~ 88979889 (+) False LOC110524761
XM_036978696.1 mRNA upstream 359207 88942400 ~ 88979889 (+) True LOC110524761
XM_021601346.2 mRNA upstream 767911 88570295 ~ 88571185 (+) True LOC110522898
LOC110522896 mRNA upstream 906443 88425966 ~ 88432653 (+) True LOC110522896
XM_036978726.1 mRNA downstream 307758 89648309 ~ 89669213 (+) True LOC118964683
XM_036978727.1 mRNA downstream 379887 89720438 ~ 89762349 (+) False kifap3a
XM_036978729.1 mRNA downstream 379887 89720438 ~ 89762349 (+) False kifap3a
XR_005051888.1 mRNA downstream 379887 89720438 ~ 89762349 (+) False kifap3a
XR_002473648.2 mRNA downstream 472475 89813026 ~ 89846992 (+) False swt1
TU512417 other upstream 1034647 88303307 ~ 88304449 (+) True G452697
TU512390 other upstream 1115469 88223282 ~ 88223627 (+) True G452673
TU512316 other upstream 1213229 88120399 ~ 88125867 (+) True G452609
TU511831 other upstream 1435656 87902315 ~ 87903440 (+) True G452159
TU511759 other upstream 1567002 87770604 ~ 87772094 (+) True G452111
TU513314 other downstream 44674 89385225 ~ 89386470 (+) True G453429
TU513445 other downstream 259413 89599964 ~ 89600696 (+) True G453547
TU514832 other downstream 1106144 90446695 ~ 90447956 (+) True G454751
TU515294 other downstream 1447967 90788518 ~ 90790211 (+) True G455168
TU515337 other downstream 1653314 90993865 ~ 90994299 (+) True G455203

Expression Profile