RNA id: TU513445


Basic Information

Item Value
RNA id TU513445
length 733
RNA type TUCP
GC content 0.48
exon number 1
gene id G453547
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89599964 ~ 89600696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtccatacccaaacagttcgaacttctaattttaaaaatgaatctctccagaaataagtctctcattGTTGCCGCCTGcaaccgacccccctcagctcccagctgtgccctggacaccatttgtgaattgatcgccccccatctagcttcagagtttgttctgttaggtgatctaaattgggatatgcttaacaccccggcagtcctacaatctaagctagatgccctcaatctcacacaaatcatcaaggaacccaccaggtacaaccctaaatctgtaaacaagggcaccctcatagatgttatcctgaccaactggccctccaaatacacctccgctgtcttcaatcaggatctcagcgatcactgcctcattgcctgtatccgctacgggtccgcggtcaaacaaccacccctcatcactgtcaaacgctccctaaaacacttctgcgagcaggcctttctaatcgacctggcccgggtatcctggaaggttattgacctcatcccgttagttgaggatgcctggtcattctttaagagtaacttcctcaccatcttagataagcatgctccgttcaaaaaatgcagaactaagaacagatatagcccttggttcactccagaactgactgccctcgaccggcacaaaaacatcctgtggcggactgcaatagcatcgaatagtccccgcgatatgcaacttttcagggaagtcaggaaccaaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513443 lncRNA upstream 1726 89598008 ~ 89598238 (+) True G453545
TU513436 lncRNA upstream 21820 89577870 ~ 89578144 (+) True G453538
TU513405 lncRNA upstream 89617 89510057 ~ 89510347 (+) True G453511
TU513389 lncRNA upstream 107642 89490143 ~ 89492322 (+) True G453495
TU513386 lncRNA upstream 110108 89488326 ~ 89489856 (+) True G453494
TU513450 lncRNA downstream 5937 89606633 ~ 89606921 (+) True G453552
TU513453 lncRNA downstream 7786 89608482 ~ 89608871 (+) True G453555
TU513972 lncRNA downstream 8587 89609283 ~ 89609511 (+) True G453984
TU513980 lncRNA downstream 13844 89614540 ~ 89614765 (+) True G453992
TU513984 lncRNA downstream 17335 89618031 ~ 89621650 (+) True G453994
XM_036978694.1 mRNA upstream 620075 88655985 ~ 88979889 (+) False LOC110524761
XM_036978695.1 mRNA upstream 620075 88655985 ~ 88979889 (+) False LOC110524761
XM_036978696.1 mRNA upstream 620075 88942400 ~ 88979889 (+) True LOC110524761
XM_021601346.2 mRNA upstream 1028779 88570295 ~ 88571185 (+) True LOC110522898
LOC110522896 mRNA upstream 1167311 88425966 ~ 88432653 (+) True LOC110522896
XM_036978726.1 mRNA downstream 47613 89648309 ~ 89669213 (+) True LOC118964683
XM_036978727.1 mRNA downstream 119742 89720438 ~ 89762349 (+) False kifap3a
XM_036978729.1 mRNA downstream 119742 89720438 ~ 89762349 (+) False kifap3a
XR_005051888.1 mRNA downstream 119742 89720438 ~ 89762349 (+) False kifap3a
XR_002473648.2 mRNA downstream 212330 89813026 ~ 89846992 (+) False swt1
TU513314 other upstream 213494 89385225 ~ 89386470 (+) True G453429
TU512417 other upstream 1295515 88303307 ~ 88304449 (+) True G452697
TU512390 other upstream 1376337 88223282 ~ 88223627 (+) True G452673
TU512316 other upstream 1474097 88120399 ~ 88125867 (+) True G452609
TU511831 other upstream 1696524 87902315 ~ 87903440 (+) True G452159
TU514832 other downstream 845999 90446695 ~ 90447956 (+) True G454751
TU515294 other downstream 1187822 90788518 ~ 90790211 (+) True G455168
TU515337 other downstream 1393169 90993865 ~ 90994299 (+) True G455203
TU515346 other downstream 1460394 91061090 ~ 91062621 (+) False G455211
TU515348 other downstream 1460394 91061090 ~ 91062621 (+) False G455211

Expression Profile