RNA id: TU514649


Basic Information

Item Value
RNA id TU514649
length 1359
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G454584
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90192111 ~ 90193469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGGTAACTGACTAAGGATGAAGTGGTTAAAAGAATCCTATGAACCTTTAATGTTGTGATTGTATTGACTGTAATGAAGTAATGACCACTACTGTTCCTATCGGACACACAGGTAATGGAGTGTGTTGTGTACTCTGGGGATGAGGAAGAGGGGTGATTACCTGAGGTGGGCAAGAGTTTGACCATAGAGATGTGATACAATGGTGCAATGTCGATCTAAGTCTGACTGATAGACAGCCAAACTCCTCTCGCCAACAAGTCTCTACAGGCACCATTTCAGACCAATCAAATTACTTGCTCTGTTCTCCGGTCTGATGTCACAACATTTTGCGACCAACCAGCCAAAGAGTTACGCAAAGGAGGGAACTGACCCTTTTTTTTGGTATTCAAGCACTTCCCAATAAGTTAATAGGTAGATGTAAATAAAGGCTAGATAATGTTTCTTGTCTCTACCACTTTAagcctgaggagaggaggaggggaggaagactaCATTCTGGACCAACGGTGGACTCATCATGGGACCTGGAGAAGTAGTCTGGGTCATCTGTAAAGATCACAACACCTTGTGGACGAGAGAGGGCAGTGTAAAGTACAAGAGGGTCAAACAATTCATTCTAGTTCCACAAAGCCCCTTAACATTGGAGAGAACAGGATTCTATTTAAGATATCTGGCCAATAAATAGATGTTTACTTCCATCCGAGGGGAACTCGCTATTTTGTAAACTCTTTGGTGTGCACCAGGGACGAGTGTTGAGTCATCTCCTAATCTGCCTCCTGGGATTGCAGTGCTGTTCTCCTGTCCCACTTTAGTAGTTCTCATATACGAACAGTCTTTTTCTACTAGTTCCCATTTACTTATGTGGCAGCTTTAccaaccaaccacacacacacacacatacatacatccacgcACATGCTCGTTCGCAGTGGTGCTGCATACAGAGGTCGCAACCTTTTCTGTGCCCCCCCCATTTACACCGTCCTTTTAAAGTGCTCTCAGTAGGGATAGGCGGAGACGGCGATGTAGACGATGAAGGTGGTCTGGTACTCGATGCCTCCGTCAGCGCTGTAGGACAGGGAGCGAACCTTCATCCTGAAGGTGTGGGGCTCTCGGAGGGCCCTGGTTGTGAACAGCACCCCTTTCAGGTTCTCGTCTCGCAGGGCGAAGGGTAACGTCACGTCCTCGTCCACCACCAGGAAGGAGGTACGGGGGTGCACCACGCCGTCCTGCGTGTACGCCACCAGCCGGATCAGGTCCTGATTGGCCGCAATGCCAAAGGGGAGGGACAGCAGTTTGTACTCCAGTGCGTAAGGGCTTAGTGCACACTCCAGGTCGTTGGGAGGGCATTTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU514661 lncRNA downstream 3257 90188366 ~ 90188854 (-) True G454596
TU514660 lncRNA downstream 3924 90187714 ~ 90188187 (-) True G454595
TU514651 lncRNA downstream 4646 90178901 ~ 90187465 (-) True G454586
TU514658 lncRNA downstream 15858 90176042 ~ 90176253 (-) True G454593
TU514656 lncRNA downstream 18404 90173126 ~ 90173707 (-) True G454591
TU514663 lncRNA upstream 10434 90203903 ~ 90204135 (-) True G454598
TU514648 lncRNA upstream 17764 90211233 ~ 90272430 (-) True pla2g4ab
TU514698 lncRNA upstream 86203 90279672 ~ 90280207 (-) True G454631
TU514708 lncRNA upstream 93583 90287052 ~ 90287267 (-) True G454641
TU514721 lncRNA upstream 107693 90301162 ~ 90301379 (-) True G454653
XM_036978735.1 mRNA downstream 273272 89853540 ~ 89918839 (-) False ivns1abpa
XM_036978733.1 mRNA downstream 284358 89853540 ~ 89907753 (-) False ivns1abpa
XM_036978736.1 mRNA downstream 299377 89853540 ~ 89892734 (-) False ivns1abpa
XM_036978732.1 mRNA downstream 379798 89798954 ~ 89812313 (-) False trmt1l
XM_021604677.2 mRNA downstream 400825 89763289 ~ 89791286 (-) True niban1a
XM_021604684.2 mRNA upstream 197 90193666 ~ 90203568 (-) True arpc5b
XM_036978742.1 mRNA upstream 17613 90211082 ~ 90260742 (-) False pla2g4ab
XM_021604685.2 mRNA upstream 17613 90211082 ~ 90261823 (-) False pla2g4ab
XM_021604687.2 mRNA upstream 17613 90211082 ~ 90261824 (-) False pla2g4ab
XM_021604693.2 mRNA upstream 136359 90329828 ~ 90332933 (-) True LOC110524783
TU514643 other downstream 45798 90145825 ~ 90146313 (-) True G454579
TU514429 other downstream 379806 89809035 ~ 89812305 (-) True trmt1l
TU513891 other downstream 749734 89441584 ~ 89442377 (-) True G453915
TU513777 other downstream 955503 89234225 ~ 89236608 (-) False G453823
TU514974 other upstream 202378 90395847 ~ 90396236 (-) True G454875
TU515000 other upstream 249627 90443096 ~ 90443490 (-) True G454900
TU514982 other upstream 261212 90454681 ~ 90473614 (-) True G454882
TU515713 other upstream 692603 90886072 ~ 90902401 (-) True LOC110524787
TU515863 other upstream 863988 91057457 ~ 91060985 (-) True G455630

Expression Profile