RNA id: TU514976


Basic Information

Item Value
RNA id TU514976
length 519
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G454877
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90397341 ~ 90397859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcacttcagtaataaattaatgaacttctttgaggaaaatgatcatgatcattagaaagcaaattacggactcctctttaaatctgcgtattcctccaaagctcagttgtcctgagtctgcacaactctgccaggacctaggatcaagagagacgctcaagtgttttagtactatatctcttgacacaatgatgaaaataatcatggactctaaaccttcaagctgcatactggaccctattccaactaaactactgaaagagctgcttcctgtgcttggccctcctatgttgaacataataaacggctttctatcggatgtgtaccaaactcactaaaattggcagtaataaagcctctcttgaaaaatccaaaccttgacccagaaaatattaacTATCGGCCTATATAGAATCTTCCATATCTCTCAAAATttgtagaaaaagctgttgcgcagcaatgtatacgaaatgcttcagtctggttttagaccccatcatagtactgagactgcactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU514973 lncRNA downstream 4380 90392667 ~ 90392961 (-) True G454874
TU514721 lncRNA downstream 95962 90301162 ~ 90301379 (-) True G454653
TU514708 lncRNA downstream 110074 90287052 ~ 90287267 (-) True G454641
TU514698 lncRNA downstream 117134 90279672 ~ 90280207 (-) True G454631
TU514648 lncRNA downstream 124911 90211233 ~ 90272430 (-) True pla2g4ab
TU514980 lncRNA upstream 6974 90404833 ~ 90405070 (-) True G454881
TU514990 lncRNA upstream 16444 90414303 ~ 90414509 (-) True G454890
TU514914 lncRNA upstream 30937 90428796 ~ 90429232 (-) True G454824
TU514916 lncRNA upstream 32495 90430354 ~ 90430471 (-) True G454826
TU514999 lncRNA upstream 44104 90441963 ~ 90442350 (-) True G454899
XM_036978744.1 mRNA downstream 13247 90364241 ~ 90384094 (-) True b3galt2
XM_036979079.1 mRNA downstream 62013 90332712 ~ 90335328 (-) True LOC118936343
XM_021604693.2 mRNA downstream 64408 90329828 ~ 90332933 (-) True LOC110524783
XM_021604687.2 mRNA downstream 135517 90211082 ~ 90261824 (-) False pla2g4ab
XM_021604685.2 mRNA downstream 135518 90211082 ~ 90261823 (-) False pla2g4ab
XM_036978750.1 mRNA upstream 420928 90818787 ~ 90902390 (-) False LOC110524787
XM_036978749.1 mRNA upstream 420928 90818787 ~ 90902393 (-) False LOC110524787
XM_036978752.1 mRNA upstream 420928 90818787 ~ 90902393 (-) False LOC110524787
XM_036978753.1 mRNA upstream 420928 90818787 ~ 90902394 (-) False LOC110524787
XM_036978751.1 mRNA upstream 420928 90818787 ~ 90902395 (-) False LOC110524787
TU514974 other downstream 1105 90395847 ~ 90396236 (-) True G454875
TU514643 other downstream 251028 90145825 ~ 90146313 (-) True G454579
TU514429 other downstream 585036 89809035 ~ 89812305 (-) True trmt1l
TU513891 other downstream 954964 89441584 ~ 89442377 (-) True G453915
TU513777 other downstream 1160733 89234225 ~ 89236608 (-) False G453823
TU515000 other upstream 45237 90443096 ~ 90443490 (-) True G454900
TU514982 other upstream 56822 90454681 ~ 90473614 (-) True G454882
TU515713 other upstream 488213 90886072 ~ 90902401 (-) True LOC110524787
TU515863 other upstream 659598 91057457 ~ 91060985 (-) True G455630
TU515828 other upstream 676137 91073996 ~ 91074763 (-) True G455600

Expression Profile