RNA id: TU514982


Basic Information

Item Value
RNA id TU514982
length 596
RNA type TUCP
GC content 0.40
exon number 2
gene id G454882
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90454681 ~ 90473614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGACAcctCtctgtttgaggaattttaattatgagatttctgtttgaatttggtgccctgctgtctgtgatttatttagaattcaaggcccaCTTAACCACCATtcctaccacagcattctgcagtgatatgccatccaaTCAGGTTTGCcactttttcaacaggacaatgactcaacacacctccaggctatgtaagggctatttgacaaaggagagagatgaagtgctgaatcagatgaccccacctccacaatcacccaaccttaaccaaattgagatggtttggaatgagttggactgcagagcagccaacaagtgctcagcatatgtgggaactccttcatgactattggaaaagcattccaggtgaagctggttgagagaaagccaagagtgtgtgaagctgccatcaaggcaaagggtggctactttgaagaatctcaaacataacatatattttgatttgtttaacactttttttttttactacatgattccatgtgttatttcatagttttgatgtcttcactgttattctacaatgtagaaatagtaaaaataaagaaacccttgaatgaggtgtatccaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU515009 lncRNA downstream 725 90453706 ~ 90453956 (-) True G454909
TU514999 lncRNA downstream 12331 90441963 ~ 90442350 (-) True G454899
TU514916 lncRNA downstream 24210 90430354 ~ 90430471 (-) True G454826
TU514914 lncRNA downstream 25449 90428796 ~ 90429232 (-) True G454824
TU514990 lncRNA downstream 40172 90414303 ~ 90414509 (-) True G454890
TU515077 lncRNA upstream 82019 90555633 ~ 90555863 (-) True G454972
TU515079 lncRNA upstream 84161 90557775 ~ 90557982 (-) True G454974
TU515729 lncRNA upstream 282486 90756100 ~ 90779081 (-) True G455513
TU515728 lncRNA upstream 309995 90783609 ~ 90814898 (-) True G455512
TU515738 lncRNA upstream 323024 90796638 ~ 90800240 (-) True G455522
XM_036978744.1 mRNA downstream 70587 90364241 ~ 90384094 (-) True b3galt2
XM_036979079.1 mRNA downstream 119353 90332712 ~ 90335328 (-) True LOC118936343
XM_021604693.2 mRNA downstream 121748 90329828 ~ 90332933 (-) True LOC110524783
XM_021604687.2 mRNA downstream 192857 90211082 ~ 90261824 (-) False pla2g4ab
XM_021604685.2 mRNA downstream 192858 90211082 ~ 90261823 (-) False pla2g4ab
XM_036978750.1 mRNA upstream 345173 90818787 ~ 90902390 (-) False LOC110524787
XM_036978749.1 mRNA upstream 345173 90818787 ~ 90902393 (-) False LOC110524787
XM_036978752.1 mRNA upstream 345173 90818787 ~ 90902393 (-) False LOC110524787
XM_036978753.1 mRNA upstream 345173 90818787 ~ 90902394 (-) False LOC110524787
XM_036978751.1 mRNA upstream 345173 90818787 ~ 90902395 (-) False LOC110524787
TU515000 other downstream 11191 90443096 ~ 90443490 (-) True G454900
TU514974 other downstream 58445 90395847 ~ 90396236 (-) True G454875
TU514643 other downstream 308368 90145825 ~ 90146313 (-) True G454579
TU514429 other downstream 642376 89809035 ~ 89812305 (-) True trmt1l
TU513891 other downstream 1012304 89441584 ~ 89442377 (-) True G453915
TU515713 other upstream 412458 90886072 ~ 90902401 (-) True LOC110524787
TU515863 other upstream 583843 91057457 ~ 91060985 (-) True G455630
TU515828 other upstream 600382 91073996 ~ 91074763 (-) True G455600
TU515886 other upstream 621095 91094709 ~ 91096335 (-) True G455649
TU515974 other upstream 783493 91257107 ~ 91258984 (-) True G455713

Expression Profile