RNA id: TU515284


Basic Information

Item Value
RNA id TU515284
length 468
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G455158
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90754282 ~ 90759245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggagatggtgtgttcagggtgatgagctctgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttgccactcatccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU515281 lncRNA upstream 2660 90751415 ~ 90751622 (+) True G455156
TU515257 lncRNA upstream 2977 90719306 ~ 90751305 (+) True G455133
TU515249 lncRNA upstream 48530 90704122 ~ 90705752 (+) True G455125
TU515193 lncRNA upstream 94743 90659232 ~ 90659539 (+) True G455086
TU515189 lncRNA upstream 97074 90656990 ~ 90657208 (+) True G455082
TU515298 lncRNA downstream 41521 90800456 ~ 90803052 (+) True G455172
TU515300 lncRNA downstream 67988 90826923 ~ 90828149 (+) True G455173
TU515301 lncRNA downstream 68253 90827188 ~ 90858751 (+) True G455174
TU515304 lncRNA downstream 69768 90828703 ~ 90829350 (+) True G455176
TU515307 lncRNA downstream 74745 90833680 ~ 90865252 (+) True G455178
XM_021601449.2 mRNA upstream 427901 90312368 ~ 90326381 (+) True pdcb
XM_036978743.1 mRNA upstream 482073 90265570 ~ 90272209 (+) True ptgs2b
XM_036978738.1 mRNA upstream 560699 89970059 ~ 90193583 (+) False hmcn1
XR_005051890.1 mRNA downstream 50608 90809543 ~ 90814365 (+) False LOC110524788
XM_036978758.1 mRNA downstream 50614 90809549 ~ 90814365 (+) True LOC110524788
XR_005051891.1 mRNA downstream 88049 90846984 ~ 90848592 (+) True LOC118964684
XR_005051892.1 mRNA downstream 119396 90878331 ~ 90880383 (+) True LOC118964685
XR_005051893.1 mRNA downstream 151423 90910358 ~ 90912406 (+) True LOC118964686
TU514832 other upstream 306326 90446695 ~ 90447956 (+) True G454751
TU513445 other upstream 1153586 89599964 ~ 89600696 (+) True G453547
TU513314 other upstream 1367812 89385225 ~ 89386470 (+) True G453429
TU512417 other upstream 2449833 88303307 ~ 88304449 (+) True G452697
TU512390 other upstream 2530655 88223282 ~ 88223627 (+) True G452673
TU515294 other downstream 29583 90788518 ~ 90790211 (+) True G455168
TU515337 other downstream 234930 90993865 ~ 90994299 (+) True G455203
TU515346 other downstream 302155 91061090 ~ 91062621 (+) False G455211
TU515348 other downstream 302155 91061090 ~ 91062621 (+) False G455211
TU515349 other downstream 302155 91061090 ~ 91062621 (+) True G455211

Expression Profile