RNA id: TU515863


Basic Information

Item Value
RNA id TU515863
length 3276
RNA type TUCP
GC content 0.48
exon number 3
gene id G455630
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91057457 ~ 91060985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacggctgatttgttatggaatatctacattgttCGAAATGGCGCCAGAAGAAATAACAGCAGTTTGAAATGGAggcagttttacgggcgcccaaccaattgtgctattaagTGTTTTTCCAAGTTATTTGTCACTTATTacgtacataatgtttctgcaaccgtattttACAGcaaaaaatagcttctggatatcaggacagcgatcactcacctcagattagacaaagagcttctggatatcaggacagcgatcactcacctcagattagacaaagagcttctggatatcaggacagcgatcactcacctcagattagacaaagagcttctggatatcagggcagcgatcactcacctcagattagacaaagagcttctggatatcaggacagcgatcactcacctcagattagacaaagagcttctggatatcaggacagcgatcactcacctcagattagacaaagagcttctggatatcaggacagcgatcactcacctcagattagacaaagagcttctggatatcaggacagcgatcactcacctcagattagacaaagagcttctggatatcaggacagcaatcactcacctcagattagacaaagagcttctggatatcaggacagcgatcactcacctcagattagacaaagagcttctggatatcaggacagcgatcactcacctcagattagacaaagagcttctggatatcaggacagcgatcactcacctcagattagacaaagagtttTTCTTCAATAAGCAGGACGCACAGGACATTCTACAAACACCCGACTAGGCCAACATCCCAGTTATTGGCAAGAGGaagagacgcaggtacagaggacacagagtGGGGTGCTTCGTAAGGATCCGCtgaaggcgagtgggaaagctgccattactgtcaatattactcgccaacgtgcaatcattggacaataaattacacgaggtacgatcacgaatatcctactaacgggacatcaaaaactgtaacatcttatgtttcacggaatcgtggctgaatgatgacatggatattcagcgagcgggatatacgctggagggggggggggggggggttctgtgcatatttgtaaacaacagctggtgcagggaATTTTCATCTATACTTTCGTGGCTGTTTGTTTACCACCACAGatggatgctggcactaagaccgcactcagtcagctgtgtaaggaaataagcaaacaggaaaccgctcacccagaggcggccaGAGAGTTTAATGCAGGGAAATGTGAATCAGTTCTACCTAACttatatcaacatgttaaatgtgcaaccagagggaaataaattctagatcacctgtactccacacacagagacgcgtacaaagctctccctcgccatccacttggtaaatctgaccacaattctatcctctcgattcctgcttacaagaaaaaattaatgcaggaagtaccagtgactcggtctataaaaaagaggtcagatgaagcagatgctaaactacaggactgttttgctatcacagactggaacgttccgggattcttccgatggcattgaggagtacaccatatcagttttatcaataagtgcatcgaggacgtcatccccacagtgactgtacgtgcataccccaaccagaagccatggattacaggcaacattcgcactgagctaaagggtagagctgccgggactctaacccggaagcttataagaaatcctgctatgccctccggcgaaccatcaaacaggcaaagagtcaatacagggctaagactgaatcatactacaccggctgcgatgctcgtcttatgtggcagggcttgcaaactattacagactacaaagggaaacacagccgcaagctgcccagtggcaCGAGCCTAATAGACGAgataaatcacttctatgctcgcttcgaggcaagcaacactgaggcatgcatgagagcatcagctgttccggacaactgtgtgatcatgctctctgtaggtcaacattcacaaggccagacggattaccaggacatgtgctccgggcatgtgctgaccaactggcaggtgttttactgacattttcaacatgtccctgattgagtctgtaataccaacatgtttcaagcagaccatcatagtccctgtgcccaggaacactaaggtaacctgcctaaatgactacagacccatagcactcacgtccatagccatgaagtgctttgaaaggctggtcaggctcacatcaacaccattatcctagaaaccctagacccactccaatttgcataccgcccaaacagatccacagatgaaggcatctctattgcacttcacactgccctttcccgcctggacaaaaggaacacctgcgtaagaatgctattcattgactacagctcatcgttcaacaccatagtaccctcaaagctcatcactaagctaaggatcctgggactaaacacctccctctgcaactggatcctggacttcctgatgggccgcccctccaggtggtgagggtaggtagcaacacatctgccagactgatcctcaacactggggcccctcaggggtgtgtgctcagtcccctcctgtactccctgttcacccacgactgcgtggccaggcacgactccaacaccatcattaagtttgcagacgtcACAATGGCCGGATTCAACCCCTTAACATGCCTGATCATCAAAAACGACAACacagggcacgacaaagcctatgccctctcaggaaactaaaaggatgtggcatgggtcctcagatcctcaaaaggttctacagctgcaacatcgagagcactggttgcatcactgcctgttacggcaactgctcggcctccaaccgcaaggcactacagagggtagtgcgtacggcccagtacatcactggggctaagctgcctgccatccaggacctctacaccaggcggtgtcagaggaaggccctaaaaattgtcaaagaccccagccaccccagactgttctctctactaccgcatggcaaccggtaccggagggccaagtctaggaccaaaaggcttctcaacagttttcacccacaagccataagactccgggatgctgaccttctaggcagagttgcaaagaaaaagccatatctcagactggccaataaaagattaagatgggcaaaagaacacagacactggacagaggaactctgcctcgaaggccagcatcccagagtcgcctcttcactgttgacattgagactggtgttttgcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU515844 lncRNA downstream 20403 91036520 ~ 91037054 (-) True G455613
TU515841 lncRNA downstream 22308 91033822 ~ 91035149 (-) False G455612
TU515843 lncRNA downstream 22775 91033822 ~ 91034682 (-) True G455612
TU515747 lncRNA downstream 61147 90996084 ~ 90996310 (-) True aspm
TU515812 lncRNA downstream 73698 90983425 ~ 90983759 (-) True G455584
TU515864 lncRNA upstream 89 91061074 ~ 91062936 (-) True G455631
TU515872 lncRNA upstream 10727 91071712 ~ 91073030 (-) True G455639
TU515880 lncRNA upstream 26016 91087001 ~ 91087225 (-) True G455644
TU515881 lncRNA upstream 27609 91088594 ~ 91088799 (-) True G455645
TU515882 lncRNA upstream 28881 91089866 ~ 91090246 (-) True G455646
XM_036978745.1 mRNA downstream 53825 90979189 ~ 91003632 (-) False aspm
XM_036978746.1 mRNA downstream 53825 90979189 ~ 91003632 (-) False aspm
XM_036978748.1 mRNA downstream 53825 90979189 ~ 91003632 (-) False aspm
XM_036978756.1 mRNA downstream 125196 90912429 ~ 90932261 (-) False LOC110524789
XM_036978755.1 mRNA downstream 125196 90912450 ~ 90932261 (-) True LOC110524789
XR_005051894.1 mRNA upstream 44815 91105800 ~ 91109094 (-) True LOC118964688
XM_036978764.1 mRNA upstream 70623 91131608 ~ 91220909 (-) False LOC110524793
XM_036978763.1 mRNA upstream 70623 91131608 ~ 91221702 (-) False LOC110524793
XM_036978762.1 mRNA upstream 70623 91131608 ~ 91291859 (-) True LOC110524793
XM_021604691.2 mRNA upstream 241559 91302544 ~ 91312345 (-) False lhx9
TU515713 other downstream 155056 90886072 ~ 90902401 (-) True LOC110524787
TU514982 other downstream 583843 90454681 ~ 90473614 (-) True G454882
TU515000 other downstream 613967 90443096 ~ 90443490 (-) True G454900
TU514974 other downstream 661221 90395847 ~ 90396236 (-) True G454875
TU514643 other downstream 911144 90145825 ~ 90146313 (-) True G454579
TU515828 other upstream 13011 91073996 ~ 91074763 (-) True G455600
TU515886 other upstream 33724 91094709 ~ 91096335 (-) True G455649
TU515974 other upstream 196122 91257107 ~ 91258984 (-) True G455713
TU516686 other upstream 835651 91896636 ~ 91914788 (-) True G456288
TU518021 other upstream 1450934 92511919 ~ 92514384 (-) True G457385

Expression Profile