RNA id: TU515972


Basic Information

Item Value
RNA id TU515972
length 466
lncRNA type intronic
GC content 0.48
exon number 4
gene id G455711
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91242497 ~ 91248997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggtgatgggtactggtccaggtaatatgtacatgtaggtaggggtgatgggtactggtccaggtaatatgtacatgtaggtggggtgatgggtacaggtcagtccaggtaatatgtacatgtaggtggggtgatgggtactggtccaggtaatatgtacatgtaggtaggggtgatgggtactggtccaggtaatatgtacatgtaggtggggtgatgggtactggtccaggtaatatgtacatgtaggtagggtgatgggtactggtccaggtaatatgtacatgtaggtggggtgatgggtactggtccaggtaatatgtacatgtaggtagggtgatgggtactggtccaggtaatatgtacatgtaggtggggtgatgggtactggtccaggtaatatatacatgtaggtggggtgatgggtactggtccaggtcatttgtacatgtaggtaggggtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU515926 lncRNA downstream 52943 91189110 ~ 91189554 (-) True G455685
TU515900 lncRNA downstream 129704 91112399 ~ 91112793 (-) True G455662
TU515899 lncRNA downstream 130369 91111837 ~ 91112128 (-) True G455661
TU515889 lncRNA downstream 141586 91100712 ~ 91100911 (-) True G455651
TU515882 lncRNA downstream 152251 91089866 ~ 91090246 (-) True G455646
TU515967 lncRNA upstream 2585 91247492 ~ 91248997 (-) True G455711
TU515979 lncRNA upstream 37156 91282063 ~ 91282769 (-) True G455718
TU516014 lncRNA upstream 118378 91363285 ~ 91445348 (-) False G455751
TU516015 lncRNA upstream 118378 91363285 ~ 91457328 (-) True G455751
TU516024 lncRNA upstream 130499 91375406 ~ 91430319 (-) True G455760
XM_036978763.1 mRNA downstream 20795 91131608 ~ 91221702 (-) False LOC110524793
XM_036978764.1 mRNA downstream 21588 91131608 ~ 91220909 (-) False LOC110524793
XR_005051894.1 mRNA downstream 133403 91105800 ~ 91109094 (-) True LOC118964688
XM_036978746.1 mRNA downstream 238865 90979189 ~ 91003632 (-) False aspm
XM_021604691.2 mRNA upstream 57637 91302544 ~ 91312345 (-) False lhx9
XM_021604688.2 mRNA upstream 58843 91303750 ~ 91312346 (-) False lhx9
XM_021604689.2 mRNA upstream 58843 91303750 ~ 91312357 (-) False lhx9
XM_021604690.2 mRNA upstream 58843 91303750 ~ 91315662 (-) True lhx9
XM_021604708.2 mRNA upstream 415920 91660827 ~ 91677939 (-) True abhd8b
TU515886 other downstream 146162 91094709 ~ 91096335 (-) True G455649
TU515828 other downstream 167734 91073996 ~ 91074763 (-) True G455600
TU515863 other downstream 181512 91057457 ~ 91060985 (-) True G455630
TU515713 other downstream 340096 90886072 ~ 90902401 (-) True LOC110524787
TU514982 other downstream 768883 90454681 ~ 90473614 (-) True G454882
TU515974 other upstream 12200 91257107 ~ 91258984 (-) True G455713
TU516686 other upstream 651729 91896636 ~ 91914788 (-) True G456288
TU518021 other upstream 1267012 92511919 ~ 92514384 (-) True G457385
TU518066 other upstream 1327072 92571979 ~ 92573894 (-) False G457422
TU518067 other upstream 1327072 92571979 ~ 92573894 (-) True G457422

Expression Profile