RNA id: TU516382



Basic Information


Item Value
RNA id TU516382
length 313
lncRNA type intronic
GC content 0.50
exon number 1
gene id G456053
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91757040 ~ 91757352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gataaaagacagtactgtgcagccgtcttcatagaccttgccaaggctttcgactctgtcaatcaccgtattcttatcggcagactcagtagcctcggtttttcggatgactgccttgcctggttcaccaattactttgcagacagagttcagtgtgtcaaatcggagggcatgctgtccggtcctctggcagtctctatgggggtgccacatggttcaattctcgggccgactcttttctctgtatatatcaatgatgtttctcatgctgcgggcgattccctgatccacctctacgcagacgacaccattc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU516381 lncRNA downstream 142 91756558 ~ 91756898 (-) True G456052
TU516352 lncRNA downstream 40619 91712503 ~ 91716421 (-) True G456030
TU516355 lncRNA downstream 41544 91714489 ~ 91715496 (-) True G456033
TU516246 lncRNA downstream 71960 91681939 ~ 91685080 (-) True ano8b
TU516266 lncRNA downstream 76310 91679755 ~ 91680730 (-) True G455958
TU516385 lncRNA upstream 3011 91760363 ~ 91760600 (-) True G456056
TU516389 lncRNA upstream 10168 91767520 ~ 91767787 (-) True G456060
TU516392 lncRNA upstream 13480 91770832 ~ 91771097 (-) True G456063
TU516398 lncRNA upstream 21202 91778554 ~ 91778772 (-) True G456069
TU516400 lncRNA upstream 22128 91779480 ~ 91779797 (-) True G456071
XM_021604708.2 mRNA downstream 79101 91660827 ~ 91677939 (-) True abhd8b
XM_021604690.2 mRNA downstream 441378 91303750 ~ 91315662 (-) True lhx9
XM_021604689.2 mRNA downstream 444683 91303750 ~ 91312357 (-) False lhx9
XM_021604688.2 mRNA downstream 444694 91303750 ~ 91312346 (-) False lhx9
XM_021604691.2 mRNA downstream 444695 91302544 ~ 91312345 (-) False lhx9
XM_021604712.2 mRNA upstream 67253 91824605 ~ 91828072 (-) True plvapb
XM_036978784.1 mRNA upstream 75029 91832381 ~ 91849143 (-) True babam1
XM_036978790.1 mRNA upstream 220859 91978211 ~ 91980596 (-) False LOC110524808
XM_036978789.1 mRNA upstream 220860 91978212 ~ 91980536 (-) False LOC110524808
XM_036978788.1 mRNA upstream 220860 91978212 ~ 91980547 (-) False LOC110524808
TU515974 other downstream 498056 91257107 ~ 91258984 (-) True G455713
TU515886 other downstream 660705 91094709 ~ 91096335 (-) True G455649
TU515828 other downstream 682277 91073996 ~ 91074763 (-) True G455600
TU515863 other downstream 696055 91057457 ~ 91060985 (-) True G455630
TU515713 other downstream 854639 90886072 ~ 90902401 (-) True LOC110524787
TU516686 other upstream 139284 91896636 ~ 91914788 (-) True G456288
TU518021 other upstream 754567 92511919 ~ 92514384 (-) True G457385
TU518066 other upstream 814627 92571979 ~ 92573894 (-) False G457422
TU518067 other upstream 814627 92571979 ~ 92573894 (-) True G457422
TU518070 other upstream 817031 92574383 ~ 92574754 (-) True G457423

Expression Profile