RNA id: TU516398



Basic Information


Item Value
RNA id TU516398
length 219
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G456069
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91778554 ~ 91778772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gctcgagctgttttgcaaggaggaatgggaaaaaaattcagtctctcaatgtacaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaagtttgaaatatccaataaatgtcgttccacttca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU516392 lncRNA downstream 7457 91770832 ~ 91771097 (-) True G456063
TU516389 lncRNA downstream 10767 91767520 ~ 91767787 (-) True G456060
TU516385 lncRNA downstream 17954 91760363 ~ 91760600 (-) True G456056
TU516382 lncRNA downstream 21202 91757040 ~ 91757352 (-) True G456053
TU516381 lncRNA downstream 21656 91756558 ~ 91756898 (-) True G456052
TU516400 lncRNA upstream 708 91779480 ~ 91779797 (-) True G456071
TU516678 lncRNA upstream 57015 91835787 ~ 91836552 (-) False G456286
TU516679 lncRNA upstream 57015 91835787 ~ 91836552 (-) True G456286
TU516697 lncRNA upstream 83332 91862104 ~ 91863274 (-) True G456295
TU516701 lncRNA upstream 89956 91868728 ~ 91869129 (-) True G456299
XM_036978774.1 mRNA downstream 6103 91681845 ~ 91772451 (-) False ano8b
XM_036978775.1 mRNA downstream 6103 91681845 ~ 91772451 (-) False ano8b
XM_036978778.1 mRNA downstream 6103 91686471 ~ 91772451 (-) False ano8b
XM_036978776.1 mRNA downstream 6104 91681845 ~ 91772450 (-) False ano8b
XM_036978777.1 mRNA downstream 6104 91681845 ~ 91772450 (-) False ano8b
XM_021604712.2 mRNA upstream 45833 91824605 ~ 91828072 (-) True plvapb
XM_036978784.1 mRNA upstream 53609 91832381 ~ 91849143 (-) True babam1
XM_036978790.1 mRNA upstream 199439 91978211 ~ 91980596 (-) False LOC110524808
XM_036978789.1 mRNA upstream 199440 91978212 ~ 91980536 (-) False LOC110524808
XM_036978788.1 mRNA upstream 199440 91978212 ~ 91980547 (-) False LOC110524808
TU515974 other downstream 519570 91257107 ~ 91258984 (-) True G455713
TU515886 other downstream 682219 91094709 ~ 91096335 (-) True G455649
TU515828 other downstream 703791 91073996 ~ 91074763 (-) True G455600
TU515863 other downstream 717569 91057457 ~ 91060985 (-) True G455630
TU515713 other downstream 876153 90886072 ~ 90902401 (-) True LOC110524787
TU516686 other upstream 117864 91896636 ~ 91914788 (-) True G456288
TU518021 other upstream 733147 92511919 ~ 92514384 (-) True G457385
TU518066 other upstream 793207 92571979 ~ 92573894 (-) False G457422
TU518067 other upstream 793207 92571979 ~ 92573894 (-) True G457422
TU518070 other upstream 795611 92574383 ~ 92574754 (-) True G457423

Expression Profile