RNA id: TU516765


Basic Information

Item Value
RNA id TU516765
length 263
lncRNA type read_through
GC content 0.41
exon number 2
gene id G456343
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91940411 ~ 91985822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaactgctgttcacaaatgctctccatacaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagacataccccaagcgacttacagctgtaatcgcagctggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgctttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU516729 lncRNA downstream 33999 91905280 ~ 91906412 (-) True G456317
TU516727 lncRNA downstream 35977 91903929 ~ 91904434 (-) True G456315
TU516701 lncRNA downstream 71282 91868728 ~ 91869129 (-) True G456299
TU516697 lncRNA downstream 77137 91862104 ~ 91863274 (-) True G456295
TU516679 lncRNA downstream 103859 91835787 ~ 91836552 (-) True G456286
TU516761 lncRNA upstream 9876 91995698 ~ 91997331 (-) True G456341
TU516786 lncRNA upstream 19418 92005240 ~ 92007813 (-) False si:ch73-61d6.3
TU516787 lncRNA upstream 19418 92005240 ~ 92007813 (-) False si:ch73-61d6.3
TU516788 lncRNA upstream 19418 92005240 ~ 92007813 (-) False si:ch73-61d6.3
TU516789 lncRNA upstream 19418 92005240 ~ 92007813 (-) False si:ch73-61d6.3
XM_036978784.1 mRNA downstream 91268 91832381 ~ 91849143 (-) True babam1
XM_021604712.2 mRNA downstream 112339 91824605 ~ 91828072 (-) True plvapb
XM_036978775.1 mRNA downstream 167960 91681845 ~ 91772451 (-) False ano8b
XM_021604721.2 mRNA upstream 19454 92005276 ~ 92045022 (-) False si:ch73-61d6.3
XR_002473663.2 mRNA upstream 643780 92629602 ~ 92630894 (-) False LOC110524822
XM_036978829.1 mRNA upstream 651033 92636855 ~ 92642203 (-) False senp5
XM_036978827.1 mRNA upstream 651033 92636855 ~ 92642257 (-) False senp5
XM_036978831.1 mRNA upstream 651033 92636855 ~ 92642257 (-) False senp5
TU516686 other downstream 25623 91896636 ~ 91914788 (-) True G456288
TU515974 other downstream 681427 91257107 ~ 91258984 (-) True G455713
TU515886 other downstream 844076 91094709 ~ 91096335 (-) True G455649
TU515828 other downstream 865648 91073996 ~ 91074763 (-) True G455600
TU515863 other downstream 879426 91057457 ~ 91060985 (-) True G455630
TU518021 other upstream 526097 92511919 ~ 92514384 (-) True G457385
TU518066 other upstream 586157 92571979 ~ 92573894 (-) False G457422
TU518067 other upstream 586157 92571979 ~ 92573894 (-) True G457422
TU518070 other upstream 588561 92574383 ~ 92574754 (-) True G457423
TU518094 other upstream 643516 92629338 ~ 92630812 (-) False LOC110524822

Expression Profile