RNA id: TU518049


Basic Information

Item Value
RNA id TU518049
length 704
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G457410
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 92597811 ~ 92598689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGTTGACATCGGACTCCAGATGGATCTATTACAACAGATTTAGATAGGATCATTTTTCACGAAGTAAATCGGGAgaggatgtagtgaactactttttctaAGTAATTAACTATATTTTTCTTAAGcgtagcttaacttcttccagtgtgaagtaaatTACatgttcagagtagcttcccccaacacacacagagagagagacatctagaAGGAAGAGACCCACAGAGTAgcttcccccaacacacacagacatctaGAATGAAGAGACCCACAGCACTATGATGTATGAGAAAGGGTTTATTGGCAGTTCTCCTCTTTATGACAAATTGAATGAATCAGGAAAGGGATTATTTACAAACTCGAATCCAAAAGTGAGATAGAAAGCAGTGGTGAAGAACCAGAAGAACCAGAAGAAGAACCAGTCTTATAGAAAACAATCATCTCTGCGGaagcaggagagggagggaggattccAGCACGGAGTCCTCCGGAGGACAGTTAAAGGCATCGCGCTTCGAAAACGCGTTGTTAGATCTTTCCCCCTTCAGACACAAACAACGgccatgtccacacacacacacacacacacacacacacacacacacactcgaggactgtctactccagtgtgtgtctgtctgaacgATCCTCTCGCGGAGCTTGAAGATATGACGTCACAATCCTCGGTGAACACAGACTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU518069 lncRNA downstream 23057 92574263 ~ 92574754 (-) False G457423
TU518055 lncRNA downstream 45533 92551688 ~ 92552278 (-) True G457415
TU518015 lncRNA downstream 92959 92504443 ~ 92504852 (-) True G457382
TU517932 lncRNA downstream 228453 92369034 ~ 92369358 (-) True G457309
TU517909 lncRNA downstream 249539 92343149 ~ 92348272 (-) True G457288
TU518078 lncRNA upstream 10819 92609508 ~ 92610917 (-) True G457428
TU518084 lncRNA upstream 17083 92615772 ~ 92616321 (-) True G457432
TU518088 lncRNA upstream 24780 92623469 ~ 92624710 (-) False G457435
TU518089 lncRNA upstream 24780 92623469 ~ 92624710 (-) True G457435
TU518099 lncRNA upstream 33409 92632098 ~ 92632321 (-) True G457441
XM_021604721.2 mRNA downstream 552789 92005276 ~ 92045022 (-) False si:ch73-61d6.3
XM_036978790.1 mRNA downstream 617215 91978211 ~ 91980596 (-) False LOC110524808
XR_002473663.2 mRNA upstream 30913 92629602 ~ 92630894 (-) False LOC110524822
XM_036978829.1 mRNA upstream 38166 92636855 ~ 92642203 (-) False senp5
XM_036978827.1 mRNA upstream 38166 92636855 ~ 92642257 (-) False senp5
XM_036978831.1 mRNA upstream 38166 92636855 ~ 92642257 (-) False senp5
XM_036978828.1 mRNA upstream 38166 92636855 ~ 92642262 (-) False senp5
TU518070 other downstream 23057 92574383 ~ 92574754 (-) True G457423
TU518066 other downstream 23917 92571979 ~ 92573894 (-) False G457422
TU518067 other downstream 23917 92571979 ~ 92573894 (-) True G457422
TU518021 other downstream 83427 92511919 ~ 92514384 (-) True G457385
TU516686 other downstream 683023 91896636 ~ 91914788 (-) True G456288
TU518094 other upstream 30649 92629338 ~ 92630812 (-) False LOC110524822
TU518092 other upstream 30783 92629472 ~ 92630812 (-) False LOC110524822
TU518093 other upstream 30852 92629541 ~ 92630812 (-) False LOC110524822
TU518091 other upstream 30916 92629605 ~ 92630812 (-) True LOC110524822
TU518175 other upstream 327007 92925696 ~ 92931639 (-) False G457491

Expression Profile